as well as ofHadh.e, Smoothed gene expression trends along the delta lineage for all 12,987 genes that are expressed in at least ten cells, clustered using louvain68. Cluster 1 contains transiently upregulated genes. The solid line denotes mean...
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Fig. 1: Spectra uses gene sets and cell types to guide gene program discovery from scRNA-seq data. a, As input, Spectra receives a gene expression count matrix with cell-type labels for each cell as well as predefined gene sets, which it converts to a gene–gene graph. The algorithm f...
original cells and 24,009 metacells using different methods. Each boxplot ranges from the upper and lower quartiles with the median as the horizontal line and whiskers extend to 1.5 times the interquartile range. Two-sided T-test results: *0.01 <p ≤ 0.05, **0.001 <p ≤ 0.01,...
Command line input parameter converting string to integer in C# Command Parameters and Enums CommonApplicationData Communicating (by ip address) between computers on different networks using C# Communication between Python and C# Communication between Threads Compare 2 arrays using linq compare a string ...
seq CRs do not have rank thus only represented by one dot. Line and point types distinguish granularity of the cell type labels. The score, ranging from 0 to 1, quantitatively evaluates the quality of clustering by averaging the proportions of neighbors that share the same label (see the “...
(\beta\)can alter the level of learning pressure imposed during training, encouraging the learning of different representations. We assume a disentangled representation of the conditional independent data generative factors\({{{\bf{v}}}\)and therefore set\(\beta \, > \,1\)to apply a stronger...
This limitation could be appreciated in the final dataset, from cells purified conditional on expression of a cell surface protein, KIT. We found that cell doublets resulting from incomplete dissociation of a KIT+ erythroid cell and a KIT− macrophage could not be detected by the classifier ...
selectTaskWhen() conditional: boolean, trueTaskId: string falseTaskId: string returns a Task object based on the value of conditional semver() version: string returns a SemVer object based on the value of version statusMessage() message: string prints a status message to stdout, without a tra...
independent of each other, the batch ID s only depends on u to facilitate the disentanglement of both latent variables, and the count variables \({\{{{\boldsymbol{x}}}^{m}\}}_{m\in {{{\mathcal{M}}}_{n}}\) from different modalities are conditional independent given c and u. Bas...