Each line represents the phase boundary above which a clique is not resolved as a module because the network is too large (e.g., the marked region represents the undetectable region in the map equation). Full size image When we merge two of these cliques, the cut size is decreased by 2...
Heteroplasmy occurs when wild-type and mutant mitochondrial DNA (mtDNA) molecules co-exist in single cells1. Heteroplasmy levels change dynamically in development, disease and ageing2,3, but it is unclear whether these shifts are caused by selection or d
the sequence should be correctly clustered, however, sequence ID, sequence descripition in the ">" line of fasta may be incorrect.) Sincere apologies.
Then, use "beer_bbknn.py" in your command line (please modify parameters in beer_bbknn.py):python beer_bbknn.py Finally, load the output of beer_bbknn.py and draw UMAP:umap=read.table('bbknn_umap.txt',sep='\t',header=FALSE) umap=as.matrix(umap) rownames(umap)=rownames(pbmc@...
To select a batch effect correction approach, we evaluated correction performance on the each biological condition individually. Furthermore, we took the intersection of genes that were highly variable across all profiled samples (e.g., libraries, donors, patients) to ensure that the data being ...
pattern.This is usually caused by the contents being too bigforthe RenderFlex.Consider applying a flexfactor(e.g.using an Expanded widget)to force the childrenofthe RenderFlex to fit within the available space insteadofbeing sized to their natural size.This is considered an error condition ...
If co-expression is to be used as a means of interpreting disease gene convergence and condition specificity, the genesis of those properties are crucial to pin down. The careful exploitation of single-cell data, particularly in meta-analysis, offers a unique window into how genes work together...
12(e) illustrates that when the train undergoes a slight turn, its shape transforms from a straight line to a curve. This deformation is a challenge for many trackers which predict future trajectories based on visual characteristics. Fig. 12(f) illustrates that the train also turns. The Tab...
per treatment condition. Data were analyzed using Seurat v4.1.0. Healthy PBMCs Cryopreserved PBMCs were obtained from a commercial provider (AllCells). Cells were thawed and prepared for PIP-seq as previously described in the MPAL study, except that the final cell dilution was made in 1× ...
3k). Expression of CXCR4 and NCL was the highest in NB cells only (CD45− GD2+) compared to all other populations, which is in line with previous reports51,52. Moreover, the expression of CD44 and LRP1 was higher in co-cultured cells compared to control cells (Fig. 3k). Together...