We show that quality-score guided error correction can improve the assembly accuracy of several datasets from the NCBI SRA (Short-Read Archive) in terms of N50-values as well as runtime. We further propose a number of improvements of to our previously published CUDA-EC algorithm to improve ...
The combination of significantly lower cost and increased speed of sequencing has resulted in an explosive growth of data submitted into the primary next-generation sequence data archive, the Sequence Read Archive (SRA). The preservation... R Leinonen,H Sugawara,M Shumway - 《Nucleic Acids Resear...
tar -xvfz archive.tar.gz 解压一个gzip格式的压缩包 zipfile1.zipfile1 创建一个zip格式的压缩包 z...
shortread archive (SRA) revealed a signicant level of contamination inChIP-Seq unaligned reads with sequences of bacterial and metazoanorigin, irrespective ... WZ Ouma - 《Master of Science in Bioinformatics》 被引量: 0发表: 2009年 DENTIST – using long reads to close assembly gaps at high ...
The data that support the findings of this study are available from Sequence Read Archive (SRA). N0015, N13532 and M0253 are under accession number SRR3493407, SRX4395160 and SRX4395159, respectively. The simulated data used in this study can be generated and a detailed tutorial is openly ...
Expand DownExpand Up@@ -145,6 +147,9 @@ static int write_archive_entry(const struct object_id *oid, const char *base, write_archive_entry_fn_twrite_entry=c->write_entry; interr; constchar*path_without_prefix; unsigned longsize; ...
BioInfoTools/BBMapPublic archive Notifications Fork111 Star214 (Not Offical) BBMap short read aligner, and other bioinformatic tools. License View license 214stars111forksBranchesTagsActivity Star Notifications master 1Branch13Tags Code Folders and files ...
In recent years, many software packages for identifying structural variants (SVs) using whole-genome sequencing data have been released. When published, a new method is commonly compared with those already available, but this tends to be selective and in
Raw sequencing data and thede novohybrid assembly were submitted to NCBI Sequence Read Archive (SRA)65and NCBI Genbank66under the accession number PRJNA576869. References Wernli, D.et al. Antimicrobial resistance: The complex challenge of measurement to inform policy and the public.PLOS Med.14, ...
🐛 Bug Report Hi. We have your Foundry VTT felddy docker image installed on a Synology 16+ server. We have 0.7.5 installed. We began to update to the latest 0.7.7, but the docker installation stops after just a few seconds. To Reproduce S...