Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph By effective and efficient integration of PacBio HiFi, Oxford Nanopore Technologies ultra-long and other sequencing data types, hifiasm (UL) enables telomere-to-telomere diploid and polyploid genome assembly at ...
D. et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496–512 (1995). Article ADS CAS PubMed Google Scholar Lander, E. S. & Waterman, M. S. Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics 2, 231–239 (1988)...
Two draft sequences of Gossypium hirsutum, the most widely cultivated cotton species, provide insights into genome structure, genome rearrangement, gene evolution and cotton fiber biology. Upland cotton is a model for polyploid crop domestication and tra
A Long-Read Transcriptome Assembly of Cotton ( L.) and Intraspecific Single Nucleotide Polymorphism Discovery Upland cotton (Gossypium hirsutum L.) has a narrow germplasm base, which constrains marker development and hampers intraspecific breeding. A pressing need exists for high-throughput single nucleot...
While some plant genomes are small with limited repetitive sequences, plants are frequently polyploid and transposon rich. A substantial number of plant species are also outcrossing and highly heterozygous. Thus, while standard sequencing methods can be used on plant DNA, special attention should be ...
which is also the genome sequenced so far from the medicinally important genusTinosporaand its family42. We also carried out a comprehensive deep sequencing and assembly of the leaf transcriptome using Illumina technology. The genome-wide phylogenetic analysis was also carried out forT. cordifoliato ...
This genome encyclopedia is the perfect tool to securely integrate public and private plant data, understand data set relationships, extract knowledge and to centralize and share breeding data.M. V. EijkPlant & Animal Genomevan Eijk M. Genome assembly and Iso-Seq transcriptome sequencing of ...
which is also the genome sequenced so far from the medicinally important genusTinosporaand its family42. We also carried out a comprehensive deep sequencing and assembly of the leaf transcriptome using Illumina technology. The genome-wide phylogenetic analysis was also carried out forT. cordifoliato ...
We call this task "contig ploidy estimation", and present a method for accomplishing it. This set of methods is useful for the de novo assembly of complex, polyploid genomes such as sugarcane, switchgrass, and wheat. 展开 关键词: PLOIDY GENOMICS NUCLEOTIDE sequence PROBABILITY theory COMPUTATIONAL...
摘要: The article discusses various reports published within the issue including one on the principle behind the existing alignment and assembly methods in sequencing machines, the different signatures developed by structural variants and software, and the required different set of software in databases....