DNA Sequence Assembler is the only tool that fully automates the assembly process: Automatically detect and trim low quality regions of your samples Automatically trim vector/primer sequences Automatically correct the ambiguities in your contig Automatically save the contig to disk With DNA Sequence Ass...
SortMeRNA is a local sequence alignment tool for filtering, mapping and clustering.The core algorithm is based on approximate seeds and allows for sensitive analysis of NGS reads. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. SortMeRNA takes as input files of reads...
SortMeRNA is a local sequence alignment tool for filtering, mapping and clustering.The core algorithm is based on approximate seeds and allows for sensitive analysis of NGS reads. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. SortMeRNA takes as input files of reads...
BLAST(Basic Local Alignment Search Tool)和MSA(多序列比对,Multiple Sequence Alignment)都用于序列比对,但它们的目的和方法有显著区别: 目的和应用: BLAST:用于快速查找数据库中与给定序列相似的序列。主要用于识别功能、结构或进化关系上类似的序列。 MSA:同时比对多个序列,用于揭示这些序列之间的相似性和进化关系。MS...
(e.g., single- or paired-end sequencing). At the same time, the remaining information such as alignment positions, custom Sequence Alignment Map (SAM) tags should be preserved as close to the original as possible, and the strategy should be agnostic to the sequence alignment tool used, as...
ALSCRIPT: a tool to format multiple sequence alignments The ALSCRIPT program described in this article was developed specifically to allow the easy formatting and graphical display of large multiple alignments. ... GJ Barton - 《Protein Eng》 被引量: 2636发表: 1993年 ...
Results: We present GapMis, a tool for pairwise sequence alignment with a single gap. It is based on a simple algorithm, which computes a different version of the traditional dynamic programming matrix. The presented experimental results demonstrate that GapMis is more suitable and efficient than...
J. Basic Local Alignment Search Tool. J Mol Biol 215, 403–410 (1990). Article CAS PubMed Google Scholar Pearson, W. R. Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms. Genomics 11, 635–650, doi: http://dx....
Snapshot of the results returned by the alignment-free web tool (Alfree) for “example 1”: HIV viral sequences obtained from dental patients in Florida [186]. Briefly, in the late 1980s some patients of an HIV-positive dentist in Florida were diagnosed as infected with HIV. An investigat...
DNA Sequence Assembler is easy to use software for DNA sequence assembly/alignment, DNA sequence analysis, DNA Sequence manipulation and conversion, contig editing andmutation detection. Instant download DNA Baser Sequence Assembler Fully functional trial ...