ExPASy World Wide Web server which is dedicated to analysis protein and nucleic acid sequences and 2-D PAGE contains tools for analyzing and predicting protein via online. It allows access to various protein and proteomics databases such as SWISS-PROT, PROSITE, and ENZYME. Analysis tools and sof...
html lalignfind multiple matching subsegments in two sequences /fasta_www/lalign.htm pairwisetwo sequence alignment tool (global and local options) /applets/pairwise/ prssfrom the university of virginia (bill pearson) /fasta_www/prss.htm simalignment tool for protein sequences from expasy /tools...
PROSITE (http://prosite.expasy.org/) consists of documentation entries describing protein domains, families and functional sites, as well as associated pat... CJA Sigrist,ED Castro,L Cerutti,... - 《Nucleic Acids Research》 被引量: 759发表: 2012年 AL2CO: calculation of positional conservation...
Using Genbank retrieve the protein sequence, analysis using expasy tools and template structure for the query sequence was searched through BLASTP. Both primary sequence and template sequence was loaded and visualized in SWISS 鈥揚DB Viewer (Molecular Visualization tool). Melanoc...
Protein mW, number of amino acids, major amino acid indicates the percentage of the most abundant residue; predicted molecular weight, hydropathicity and pI were determined using the ExPASy ProtParam tool (http://us.expasy.org/tools/protparam.html). The last three silk candidates (venom serine ...
Protein Analysis Toolbox hung on certain protein sequences. A minor calculation bug in the pI calculation. The new results should more accurately reflect the actual mobility of proteins in a pH gradient gel. If you have not yet been prompted to upgrade then go to MACVECTOR | CHECK FOR UPDA...
et al. Protein Identification and Analysis Tools on the ExPASy Server. in The Proteomics Protocols Handbook 571–607 (Humana Press, 2005). https://doi.org/10.1385/1-59259-890-0:571. Rohrer, J. S., Basumallick, L. & Hurum, D. C. Profiling N-linked oligosaccharides from IgG by high-...
Nucleotide sequences were translated to protein sequences using ExPASy translate tool (http://web.expasy.org/translate). Table 2 GenBank accession numbers of nucleotide sequences generated in this study Full size table Nucleotide sequence accession numbers Nucleotide sequences determined in this study ...
Protein concentrations were measured by NanoDrop spectrophotometer at 280 nm with extinction coefficient predicted by ExPASY ProtParam. 2D 1H-15N amide HSQC spectra (Bruker pulse sequence hsqcetf3gpsi) were acquired using standard parameters at a 1H field of 800 MHz at 37 °C with recycle ...
ExPASy proteomics server. http://www.cbs.dtu.dk/services/ Van Etten JL: Unusual life style of giant Chlorella viruses. Ann Rev Genet. 2003, 37: 153-195. 10.1146/annurev.genet.37.110801.143915 Article CAS PubMed Google Scholar Benson SD, Bamford JK, Bamford DH, Burnett RM: Does common...