BCL::Align—Sequence alignment and fold recognition with a custom scoring function onlineDynamic programmingFold recognitionMultiple sequence alignmentNeedleman–Wunsch algorithmParametric sequence alignmentBCL::Align is a multiple sequence alignment tool that utilizes the dynamic programming method in combination...
Publish your sequence diagram online so that people approved can view the design online, any time and from anywhere. The comment tool allows people to, not only view the design but to leave comment right on the diagram. Versioning system helps to keep revisions for design changes. Built-in ...
Original publication to cite DIAMOND until v0.9.25: Buchfink B, Xie C, Huson DH, "Fast and sensitive protein alignment using DIAMOND", Nature Methods 12, 59-60 (2015). doi:10.1038/nmeth.3176About Accelerated BLAST compatible local sequence aligner. Topics sequence-alignment Resources Readme...
As more genome sequences become available, the demand for genome comparison is increasing. Therefore an efficient and robust algorithm is most desirable. We believe GSAlign can be a useful tool. It exhibits the abilities of ultra-fast alignment as well as high accuracy and sensitivity for detecti...
2.1.545 Part 1 Section 17.18.44, ST_Jc (Horizontal Alignment Type) 2.1.546 Part 1 Section 17.18.52, ST_MailMergeDataType (Mail Merge Data Source Type Values) 2.1.547 Part 1 Section 17.18.57, ST_Merge (Merged Cell Type) 2.1.548 Part 1 Section 17.18.59, ST_NumberFormat (Numb...
A continuation of exonerate, a generic tool for sequence alignment by Guy St. C. Slater et al. (http://www.ebi.ac.uk/~guy/exonerate/). Exonerate is apparently unmaintained. The goal of this fork is mainly bug fixes to the final version (2.4.0). ...
Snapshot of the results returned by the alignment-free web tool (Alfree) for “example 1”: HIV viral sequences obtained from dental patients in Florida [186]. Briefly, in the late 1980s some patients of an HIV-positive dentist in Florida were diagnosed as infected with HIV. An investigat...
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Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions. BMC Bioinform. 11(1), 461. https://doi.org/10.1371/journal.pgen.10024530 (2010). Article CAS Google Scholar Davidson, A. C. & Hinkley, D. V. Bootstrap Methods And ...
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25, 1972–1973 (2009). Article PubMed PubMed Central Google Scholar Nguyen, L.-T., Schmidt, H. A., von Haeseler, A. & Minh, B. Q. IQ-TREE: a fast and effective stochastic algorithm ...