seqkit grep -f id.txt C1_1.fq.gz -o result.fq.gz # 使用序列名称列表进行搜索(它们可能包含空格) seqkit grep -n -f id.txt C1_1.fq.gz -o result.fa.gz zcat result.fa.gz # 提取hsa开头的序列 zcat hairpin.fa.gz | seqkit grep -r -p ^hsa |head # -v参数v用于移除序列 zcat hairp...
SeqKit v2.9.0 includes several important fixes that affect sequence parsing and handling: Modified sequence ID parsing behavior Changes to-G/--non-greedyoption inlocatecommand Updates to negative region handling ingrep/subseq Newsum_ncolumn instatsoutput These changes might affect existing pipelines th...
seqkit grep/subseq: Fix negative regions longer than sequence length. #479. SeqKit v2.8.2 - 2024-05-17 seqkit amplicon: Fix a big introduced in v2.7.0. When more than one pairs of primers are given, only the last one is used. #457 seqkit translate: Add option -e/--skip-...