Table 1 Analysis of significantly enriched Gene Ontology terms for root hair-preferential genes from rice Full size table Our MapMan analysis (version 3.5.1R2) displayed a high-throughput dataset in diagrams for several diverse categories, e.g., metabolism, regulation, and cell functions (https:...
Our MapMan analysis (version 3.5.1R2) displayed a high-throughput dataset in diagrams for several diverse categories, e.g., metabolism, regulation, and cell functions (https://mapman.gabipd.org/) (Jung and An2012). Among the various overviews installed in the MapMan toolkit, we primarily ...
The formation of root hairs takes place as a series of developmental processes that is initiated with cell fate specification in themeristems. An overview of Root Hair formation The Trichoblast root hair forming epidermal cells participate with the diffuse growth phase that is allied to the main ...
Schematic diagrams of five truncated versions and predicted important cis-elements of putative root-tip specific promoters/enhancers. a Designing of to-be-cloned five different versions of putative root-tip specific promoters/enhancers from J3411 line. Ertip1, Ertip1 + 35Smini, Ertip2, Erti...
Fig. 2: Non-proportional Venn diagrams presenting the shared and specific DEOGs among the ancestral RNS, AMS and lateral-root transcriptomic responses. Numbers in the Venn represent the number of DEOGs belonging to ancestral RNS, AMS and/or lateral-root response.a, Upregulated DEOGs.b, Downreg...
The arbuscular mycorrhizal (AM) symbiosis consists of a mutualistic relationship between soil fungi and roots of most plant species. This association provides the arbuscular mycorrhizal fungus with sugars while the fungus improves the uptake of water and
Substrate-specific genes and GO terms for depth (a-c) and genotype (d).Venn diagrams show the numbers of differentially expressed genes (DEG) in either or both substrates. Heatmaps show mean normalized gene expression levels (variance-stabilized transformed counts,vstfunction of the DESeq2 R ...
Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M: mapman: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 2004, 37: 914-939. 10.1111/j.1365-313X.2004.020...
Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M: mapman: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 2004, 37: 914-939. 10.1111/j.1365-313X.2004.020...
The diagrams illustrate the inhomogeneous brightness for which need to be corrected on the right/left image. Step 3: Images taken with either right or left illumination were combined using minimal tonal value of each pixel. Step 4: A conversion into greyscale using the red channel is done ...