RNA-seq data from Arabidopsis thaliana to be used to generate synthetic simulationsinitialDataset
junction_annotation.py -i mutant-16_3_unique.bam -r /opt/database/Arabidopsis/TAIR10.bed -o ...
这需要较少数量的微阵列或RNA seq 库(使用1385个微阵列样本,CoNekT使用913个RNA序列样本),ARS可以通过简单的“Google-like”搜索从20000多个拟南芥RNA seq文库中快速提取任意基因的丰度信息,并对组织102特异性、发育阶段、胁迫相关以及突变体和103种治疗方法的差异表达进行多重可视化。
000个植物公共RNA-seq文库内含子剪接效率的在线资源（PISE, https://plantintron.com/），论文题为Plant Intron-Splicing Efficiency Database (PISE): exploring splicing of ~1,650,000 introns in Arabidopsis, maize, rice, and soybean from ~57,000 public RNA-seq libraries...
RNA-seq数据分析流程01：illumina测序原理 目前最为常用的NGS技术，可以应用于应用于基因组的组装，还可以...
(or any sequencing for that matter) needs to be provided as a newline separated file. The program will download the RNA-Seq files, using the requested number of cores, convert those to fastq and remove the.srafiles.downloadAndDumpFastqFromSRA.pywill continuosly query the SRA database in ...
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for transcriptome-wide analysis of differential gene expression and differential splicing of mRNAs. However, as next-generation sequencing technologies have developed, so too has RNA-seq. Now, RNA-seq methods are availa...
data to determine the wild type expression patterns of the differentially expressed genes identified from the RNA-seq experiments. The Arabidopsis ATH1 Genome Array used by Cai and Lashbrook with TAIR10 annotations has probes for 21,144 genes. Only 219 of the 277 genes with lower expression in ...
Based on 98 public and internal small RNA high throughput sequencing libraries, we mapped small RNAs to the genome of the model organism Arabidopsis thaliana and defined loci based on their expression using an empirical Bayesian approach. The resulting l
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