‘dicarboxylic acid biosynthesis process’ and ‘RNA-dependent DNA biosynthetic process/polymerase activity’ were enriched (Supplementary Fig.2and Supplementary Table10B). Notably, theH. defensamodule ApHdef-H6 contained genes that were more or mainly expressed by strain H402, among these also the A...
Several well-characterized lncRNAs have been identified in plants, such as cold-assisted intronic noncoding RNA (COLDAIR), cold-induced long antisense intragenic RNA (COOLAIR), and long-day-specific male-fertility-associated RNA (LDMAR) [12,13,14].COOLAIRandCOLDAIRmediate the flowering process in...
We performed GO analysis of these mRNAs and discovered that the top three biological processes represented by GO terms were the nucleoside phosphate biosynthetic process, nucleotide biosynthetic process, and small molecule catabolic process (Fig. 6A). As expected, KEGG pathway analysis confirmed that ...
84. RBS strengths can be measured empirically by fusing them to a reporter gene85,86. However, their strength is highly context-dependent because of sensitivities to 5′-UTR folding and the translation rates of upstream open reading frames86,87,88...
The results of GO analysis showed that most DEPs were related to regulation of gene expression, biosynthetic process, RNA metabolic process and cell cycle process. Then we mainly focused on DEPs involved in these four biological processes. Firstly, we filtrated the DEPs participated in regulation ...
Transcription, DNA-dependent 125 <.001 <0.001 RNA biosynthetic process 125 <.001 <0.001 Annotation Cluster 5 (enrichment score 6.34) Zinc ion binding 124 <.001 <0.001 Transition metal ion binding 139 <.001 0.003 Annotation Cluster 6 (enrichment score 4.99) Chromatin modification 23 <.001 <...
RNA regulatory elements play a significant role in gene regulation. Riboswitches, a widespread group of regulatory RNAs, are vital components of many bacterial genomes. These regulatory elements generally function by forming a ligand-induced alternative
In contrast, LRPPRC knockdown did not impact cell-cycle-dependent RNA degradation dynamics (Extended Data Fig. 10g), aligning with our results that it specifically affects mitochondrial mRNA stability. Together, our study emphasizes the coordinated regulation of gene expression throughout the cell cycle...
Transcription termination is an essential and dynamic process that can tune gene expression in response to diverse molecular signals. Yet, the genomic positions, molecular mechanisms, and regulatory consequences of termination have only been studied thor
3.2. Time-Dependent Effects of High-Sucrose Diet Consumption on microRNA Expression The results inFigure 2show different expression profiles of microRNAs in visceral white adipose tissue of rats after the consumption of a high-sucrose diet during development. ...