Database issue D119–D127doi: 10.1093/nar/gkw1054R-loopDB: a database for R-loop forming sequences(RLFS) and R-loopsPiroon Jenjaroenpun 1 , Thidathip Wongsurawat 1 , Sawannee Sutheeworapong 2 and VladimirA. Kuz
Jenjaroenpun P, Wongsurawat T, Sutheeworapong S, Kuznetsov VA. R- loopDB: a database for R-loop forming sequences (RLFS) and R-loops. Nucleic Acids Res. 2017;45:D119-d127.Jenjaroenpun, P., Wongsurawat, T., Sutheeworapong, S. & Kuznetsov, V. A. R-loopDB: a database for ...
构建了首个集R-loop分布与调控于一体的数据库R-loopBase,从统一不同检测技术的共性以鉴定高置信度的R-loop形成区域,到对R-loop调控蛋白的系统梳理和注释等方面做出了相应的信息整合与可视化呈现,为
(e-f) The expression of SSB1 (e) and SSB2 (f) across tissues using GTEx database. (g) Growth curves of parental and CTR DLD-1 cells. Data are mean ± SD from 4 independent experiments. (h) Western blotting of whole-cell extracts from parental and CTR DLD-1 cells. Tubulin is a...
In this study, we employed our previously developed computer algorithm, QmRLFS-finder26, to identify possible R-loop forming sequences (RLFSs) in a reference set of over 6000 viral genomes. The genome set was retrieved from the National Center for Biotechnology Information (NCBI) database and ...
Data acquisition and processing Three single-cell RNA-seq (scRNA-seq) datasets of patients with LUAD and associated clinical information were collected from the Gene Expression Omnibus (GEO) database (http://www.ncbi.nlm.nih.gov/geo/: GSE123904, GSE131907, and GSE146100). Moreover, an indep...
Protein-protein interactions of R-loop-regulated cell-type-specific genes (as shown in Figure 2C) were analyzed by STRING database (version 11.0) (Szklarczyk et al., 2016). Then, the PPI networks were visualized by Cytoscape (version 3.7.2) (Shannon et al., 2003). ChIP-Seq Data Proce...
RNA-Seq, MapR, and BLISS data generated in this study have been deposited in the GEO database under accession code GSE168173. The mass spectrometry-based proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository102 with the data set identifier PXD024...
(ftp://hgdownload.cse.ucsc.edu/goldenPath/mm10/database/). Data for 3′UTR regions were added with the UCSC genePredToGtf tool. To assess read coverage distribution across the genome, bigWig files (10-bp genomic bins) were generated with bamCoverage/deepTools v2.3.1 [72] and normalized...
Configuration: I have set the shared_preload_libraries = ‘$libdir/plugin_debugger’, restart the database server. Then create "pldbgapi" extension, and perform the steps that I have mentioned. Is your database server on the Remote machine or the same machine where pgAdmin 4 is installed?