今天研究分享的这篇文章名为“Aberrant R-loop–mediated immune evasion, cellular communication, and metabolic reprogramming affect cancer progression: a single-cell analysis”异常的R 环介导的免疫逃避、细胞通讯和代谢重编程影响癌症进展:单细胞分析。于2021年1月在Molecular Cancer上发表IF为37.3,Q1区。 一、...
Quality-controlled R-loop meta-analysis reveals the characteristics of R-loop consensus regionsR-loops are three-stranded nucleic acid structures formed from the hybridization of RNA and DNA. While the pathological consequences of R-loops have been well-studied to date, the locations, classes, and...
【文章标题】Aberrant R-loop–mediated immune evasion, cellular communication, and metabolic reprogramming affect cancer progression: a single-cell analysis 【发表杂志】Molecular Cancer(IF:37.3) 【发表时间】2024年1月 【关键词】R-loop, Tumor immune escape phenotype, Cell communication, Immunotherapy, FANC...
FQ_DIR="analysis/0-raw-data"ALIGN_DIR="analysis/2-read-align"LOG_DIR="analysis/log"TMP_DIR="analysis/tmp"mkdir-p${ALIGN_DIR}mkdir-p${LOG_DIR}mkdir-p${TMP_DIR}samples=${1?missing sample file}exec0<$samples# mark duplicationwhilereadid;doif[ ! -f${ALIGN_DIR}/${id}.mkdup.done...
awk'{print 'rename ' $2 ' ' $3 ' analysis/0-raw-data/' $2 '*.gz'}'gsm_srr_sample_name.txt|bash 这行代码看起来有点复杂,但是其实做的事情就是构建了一系列rename的命令行,然后在bash下执行。 R-ChIP分析 数据预处理 这一部分主要是将序列比对后原来的参考基因组上,标记重复,并且去掉不符合要...
1.Amplification-Free Analysis of Bladder Cancer MicroRNAs on Wrinkled Silica Nanoparticles with DNA-Functionalized Quantum Dots. PMID: 38478499 2.Endonuclear Circ-calm4 Regulates Ferroptosis via a circR-Loop of the COMP Gene in Pulmonary Artery Smooth Muscle Cells. PMID: 39187041 ...
1.Amplification-Free Analysis of Bladder Cancer MicroRNAs on Wrinkled Silica Nanoparticles with DNA-Functionalized Quantum Dots. PMID: 38478499 2.Endonuclear Circ-calm4 Regulates Ferroptosis via a circR-Loop of the COMP Gene in Pulmonary Artery Smooth Muscle Cells. PMID: 39187041 ...
1.Amplification-Free Analysis of Bladder Cancer MicroRNAs on Wrinkled Silica Nanoparticles with DNA-Functionalized Quantum Dots. PMID: 38478499 2.Endonuclear Circ-calm4 Regulates Ferroptosis via a circR-Loop of the COMP Gene in Pulmonary Artery Smooth Muscle Cells. PMID: 39187041 ...
近期该课题组发表了名为“Aberrant R-loop–mediated immune evasion, cellular communication, and metabolic reprogramming affect cancer progression: a single-cell analysis”的研究性论文。文章应用肺腺癌(LUAD)的单细胞RNA测序数据集构建了一个R-loop评分模型,根据已识别的与EGFR突变、组织来源和TNM分期相关的R-...
运行:bash scripts/09.peak_comparison.sh analysis/5-peak-calling/HKE293-D210_flt.narrowPeak analysis/5-peak-calling/HKE293-D210_flt.broadPeak analysis/5-peak-calling/peak_compare > results/narrow_vs_broad.txt 然后得到的数值就可以丢到R语言画图了,这个结果和Figure S2A一致。