python的pymol cmd中align的用法 Title: A Comprehensive Guide to the Usage of Pymol Cmd's Align Function in Python Introduction: Pymol Cmd is a powerful command-line tool widely used in the field of bioinformatics and structural biology for visualizingmacromolecular structures. Its extensive ...
1.你可以很方便的pymol自带的工具对两个或者多个蛋白进行align 步骤如下,3nss-->Action-->align-->to molecule-->5nwe 2. 当align不能满足的时候,你也可以使用pymol的插件alignment选择一个比对方式,来进行比较 这里我们先来看下比较方式的不同定义: align:首先进行序列对齐,然后进行结构叠加,随后循环几个周期...
msiexec /i D:\Temp\pyt.msi 新版的pymol安装在python27目录下,pymolrc文件需要拷贝到"C:\Users\YOU",启动文件为PyMOL目录下的pymol.exe。 如果不能加载pymolrc,可以运行PyMOL目录下的pymol.cmd,再不行就试运行一次C:\Python27\Scripts\pymol.cmd。 Pml格式的右键菜单 后缀名为pml的文件,打开方式可以用普...
defsewalign(first,second):#hide waterscmd.hide("(solvent and (all))")#hide hydrogenscmd.hide('sticks','elem H') cmd.hide('lines','elem H')#show cartooncmd.show("cartoon","all")#create duplicate of firstfirst_copy = first +"_copy"cmd.copy(first_copy, first)#select first 14 resi...
cmd.delete(all) cmd.sync() cmd.quit()print"remove the antibody of complex have done" 开发者ID:youbingchenyoubing,项目名称:asa,代码行数:31,代码来源:removeantibody.py 示例3: open_gui ▲点赞 4▼ defopen_gui(self):"""Open the PyMOL GUI."""# Use the PyMOL python modules.ifself.exec...
cmd.delete(sele1) cmd.delete(sele2) 开发者ID:MMP9,项目名称:pymol-psico,代码行数:27,代码来源:importing.py 示例2: findSurfaceAtoms ▲点赞 7▼ deffindSurfaceAtoms(selection="all", cutoff=2.5, quiet=1):""" DESCRIPTION Finds those atoms on the surface of a protein ...
cmd.delete(residue +'distFirstC') cmd.delete(residue +'distFirstO') cmd.delete("MC")returnSumWMCFirst 开发者ID:Pymol-Scripts,项目名称:Pymol-script-repo,代码行数:28,代码来源:cyspka.py 示例3: minimize ▲点赞 5▼ defminimize(selection='all', forcefield='MMFF94s', method='conjugate gra...
arg ='-qei %s'%self.foutNameExecutor.__init__( self,'pymol', args=arg, catch_err=1, catch_out=1, **kw ) 开发者ID:ostrokach,项目名称:biskit,代码行数:33,代码来源:Pymoler.py 示例5: prepare ▲点赞 1▼ defprepare( self ):""" ...
开发者ID:HumairAhmed,项目名称:HueXenClient,代码行数:33,代码来源:HueXenClient.py 示例4: __init__ ▲点赞 1▼ # 需要导入模块: import Pmw [as 别名]# 或者: from Pmw importlogicalfont[as 别名]def__init__(self,parent,titles,labels,text,cmd):Pmw.Dialog.__init__(self,parent,title=titles...
PYMOL API cmd.mask( string selection="(all)" ) SEE ALSO unmask, protect, deprotect, mouse '''r = DEFAULT_ERROR# preprocess selectionselection = selector.process(selection)#try: _self.lock(_self) r = _cmd.mask(_self._COb,"("+str(selection)+")",1,int(quiet))finally: ...