某个基因蛋白质Domain Analysis结构域,Protein-Protein Interactions蛋白质相互作用,GO Enrichment Analysis富集分析,共表达分析等等 生信小盆 生信科研的小盆地116 人赞同了该文章 一、寻找一个蛋白质 BCAR2,我们在ncbi网站中找到相关的某个基因的protein进入到网址中,找到相关的蛋白质的序列信息fasta ncbi.nlm.nih.gov...
Use Standalone RPS-BLAST and rpsbproc(https://ftp.ncbi.nih.gov/pub/mmdb/cdd/rpsbproc/e) (这个网址好像失效了)to compute and retrieve(检索) domain annotation programmatically. Basic Protocol3demonstrates how to identify protein domains for a batch of protein queries of greater than 4000.演示了...
Protein domain analysis.James CockramThomas ThielBurkhard SteuernagelNils SteinStefan TaudienPaul C. BaileyDonal M. O'Sullivan
The Conserved Domain Database (CDD) is a freely available resource for the annotation of sequences with the locations of conserved protein domain footprints, as well as functional sites and motifs inferred from these footprints. It includes protein domain and protein family models curated in house ...
The analysis highlighted Aspergillus as the most diverse genus in terms of exclusive domain content. In addition, we also investigated which domains could be considered promiscuous in the different organisms. As an application of this analysis, we explored three different ways to detect potential ...
Domain-based approaches to prediction and analysis of protein-protein interactions. Int J Knowl Discov Bioinforma (IJKDB). 2014;4(1):24-41... Morihiro,Hayashida,Tatsuya,... - 《International Journal of Knowledge Discovery in Bioinformatics》 被引量: 0发表: 2014年 Prediction of protein-protein...
Protein analysis is the bioinformatic study of protein structure and function using database searches, sequence comparisons, structural and functional predictions. Related Subjects Protein array analysis Protein sequence analyses Latest Research and Reviews Leveraging ancestral sequence reconstruction for protein...
There are various databases available to provide information about protein domains, the most well known being: Conserved Domain Database (CDD), http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml; InterPro, http://www.ebi.ac.uk/interpro; Protein ANalysis THrough Evolutionary Relationships (...
NCBI Conserved Domain Database (CDD): https://www.ncbi.nlm.nih.gov/cdd/ ⑮NCBI Protein Clusters：NCBI Protein Clusters是一个蛋白质聚类数据库，将相似的蛋白质序列聚类在一起形成蛋白质家族。它基于序列相似性和聚类算法，用于蛋白质家族的注释和功能预测。NCBI Protein Clusters: https://www.ncbi.nlm....
(~15,000 proteins) or on proteins in general. Our orthogonal computational analysis indicates that the predictions capture single-folding NusGs 99.5% percent of the time. It is less clear how accurately they capture fold switching in NusGSPs, since some do not switch folds (e.g., Variant #...