In 2022, the Worldwide Protein Data Bank (wwPDB; https://www.wwpdb.org/) partners welcomed Protein Data Bank China (PDBc; https://www.pdbc.org.cn) to the organization as an Associate Member. PDBc is based in the National Facility for Protein Science in Shanghai which is associated ...
In 2022, the Worldwide Protein Data Bank (wwPDB; https://www.wwpdb.org/) partners welcomed Protein Data Bank China (PDBc; https://www.pdbc.org.cn) to the organization as an Associate Member. PDBc is based in the National Facility for Protein Science in Shanghai which is associated ...
All the structures used for solvent-accessible surface area (SASA) analysis were obtained from the Protein Data Bank (PDB)52 or the AlphaFold Protein Structure Database53. The absolute SASA of each residue was computed using the FreeSASA program54. Only SASA data of both the labeled histidines...
However, such information of most drug targets is dispersedly deposited in the literatures or other databases like Protein Data Bank (PDB). Therefore, it is in dire need of a database containing comprehensive information of the potential target proteins. Recently, some notable efforts have been ...
[5], a chondroitin polymerase enzyme from Escherichia coli [6] involved in synthesis of chondroitin sulfate, a putative glycosyltransferase from Bacteroides fragilis [Protein Data Bank (PDB) accession 3BCV, Polani, Kumaran, Burley and Swaminathan, unpublished data] and a recently determined teichoic ...
(ApoE, IgE, and HSA) were considered in the all-atom MD simulations. The starting 3D structures of ApoE, IgE, and HSA were obtained from the Protein Data Bank (PDB) with PDB entry codes 1LE260, 4GRG61, and 1AO662, respectively. For HSA, some missing residues were added based on ...
The Protein Data Bank (PDB) database is an archive of experimentally determined 3-D biological macromolecular structure data.getpdbretrieves protein structure data from the Protein Data Bank (PDB) database, which contains 3-D biological macromolecular structure data. ...
However, as the number of protein structures in the Protein Data Bank (PDB)8 is increasing along with time, not to mention the large number of protein structures predicted by AlphaFold,9, 10 the increasing amount of large and complicated protein structures expected to be analyzed poses a ...
by utilizing the spatial information available in the Protein Data Bank (PDB) along with the mutational data in the Catalogue of Somatic Mutations in Cancer (COSMIC),GraphPACidentifies new mutational clusters in well known oncogenes such as EGFR and KRAS. Further, by utilizing graph theory to ac...
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