The website also proclaims that there have been 62987 structure hits and 11915 ligand hits on this date and that the PDB has 24583 citations.S ParasuramanMedknowJournal of Pharmacology and Pharmacotherapeutics
The Protein Data Bank From the early days of macromolecular atomic structure determination, researchers faced obstacles in trying to share the mass of data required first to calculate results for their atomic models and then to build those models. In 1971 the Protein Data Bank (PDB) was organized...
It is named in parallel with the Protein Data Bank (PDB), a long-existing valuable reference data bank for protein crystal and NMR structures. In this article, we discuss the design of the data bank structure and the deposition website located at http://pcddb.cryst.bbk.ac.uk . Our aim...
for proteins in the held-out folds (r = 0.781, P < 1 × 10−5, median error = 0.042) shows that TM-Vec is robust to out-of-distribution observations, a critical requirement for extrapolating beyond the experimental structures within the Protein Data Bank (PDB)47 (Fig...
The website also proclaims that there have been 62987 structure hits and 11915 ligand hits on this date and that the PDB has 24583 citations. The main function of this database is to organize 3-D structural data of large biological molecules including proteins and nucleic acids of all the ...
The worldwide Protein Data Bank (wwPDB) is the international collaboration that manages the deposition, processing and distribution of the PDB archive. The online PDB archive is a repository for the coordinates and related information for more than 38 000 structures, including proteins, nucleic acids...
J. ANCHOR: a web server and database for analysis of protein–protein interaction binding pockets for drug discovery. Nucleic Acids Res. 38, W407–W411 (2010). CAS PubMed PubMed Central Google Scholar Bienstock, R. J. Computational drug design targeting protein–protein interactions. Curr. ...
The Protein Data Bank (PDB) is one of two archival resources for experimental data central to biomedical research and education worldwide (the other key Primary Data Archive in biology being the International Nucleotide Sequence Database Collaboration). The PDB currently houses >134,000 atomic level...
It contains the large-scale interface data for proteins whose 3D-structures are known. As of November 2004, there were 10,583 (Geometric distance), 10,431 (ASA), and 11,010 (Voronoi diagram) entries in the Protein Data Bank (PDB) containing interfaces, according to the above three methods...
•TheProteinDataBank(PDB)isarepositoryforthe3Dstructuraldataoflargebiologicalmolecules,suchasproteinsandnucleicacids.Thedata,typicallyobtainedbyX-raycrystallographyorNMRspectroscopyandsubmittedbybiologistsandbiochemistsfromaroundtheworld,arefreelyaccessibleontheInternetviathewebsitesofitsmemberorganizations(PDBe,PDBj,and...