NGS QC Toolkit 对测序reads进行简单过滤 这个软件其实我真心不需要讲些什么了,它的官网写的太好了,简直就是软件说明书的典范 http://www.nipgr.res.in/ngsqctoolkit.html 它列出了它的几个功能模块,还给出了下载地址,还给出了说明文档,下载压缩包,解压即可使用啦 更重要的是给出了测试数据和测试的结果,而且...
Jain, 2012 NGS QC toolkit: a toolkit for quality control of next generation sequencing data. PLoS One 7: e30619.Patel R.K., Jain M. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 2012;7(2):e30619....
NGSQC toolkit 一.NGSQCTooklit 使用 主要是去除dapter和低质量的碱基,并有统计结果 可以得到如下的结果 1,每个位置的碱基的平均质量 2,每个GC值对应的reads数 3,每个质量值对应的reads数 4,每个位置对应的碱基个数 5,每个位置对应的输入碱基位置和质检后的碱基个数 6,对质量的总结. QC文件夹中包含了4支PERL...
摘要: Format converters; Illumina; NGS data quality control; NGS data trimming; Roche 454 NGS QC Toolkit is a Perl-based stand-alone program package for the quality control (QC) of next-generation...关键词: DNA Primers Sequence Analysis Data Compression Statistics as Topic Polymerization High-...
NGSQC toolkit 一、NGSQCTooklit 使用 主要是去除dapter和低质量的碱基,并有统计结果 可以得到如下的结果 1,每个位置的碱基的平均质量 2,每个GC值对应的reads数 3,每个质量值对应的reads数 4,每个位置对应的碱基个数 5,每个位置对应的输入碱基位置和质检后的碱基个数...
Format converters;Illumina;NGS data quality control;NGS data trimming;Roche 454 Definition NGS QC Toolkit is a Perl-based stand-alone program package for the quality control (QC) of next-generation sequencing (NGS) data. In addition to QC tools, it consists of many subsidiary tools for handling...
NGS QC Toolkit: a toolkit for quality check and filtering of next generation sequencing data of Roche and Illumina technology (http://www.nipgr.res.in/ngsqctoolkit.html) - mjain-lab/NGSQCToolkit
二代测序(next generation sequencing,NGS)技术是一种高通量方式产生大量的序列数据的技术。然而,序列数据的质量控制(quality control,QC)对于下游分析是极其重要的。 NGS QC工具包(NGS QC Toolkit),可以用于二代测序数据质量检查和高通量数据的过滤。它可以在http:///ngsqctoolkit.html中免费获得。它由辅助QC(序列...
To this end, we compare several important QC measures - the number of detected variants, alignment rate, mean coverage - across the different systems. We find that these numbers are absolutely identical - so we can go on.Let us first look at the runtime on the High-Performance Cluster (...
For additional information and to download this toolkit, visit the AGeNT page at www.agilent.com and review the AGeNT Best Practices document for processing steps suitable for XT HS2 RNA libraries. Library fragments include a degenerate molecular barcode (MBC) in each strand (see Figure 9 on ...