使用NLR-Annotator工具鉴定NBS-LRR位点 从NLR-Annotator-2 githubNLR-Annotator-2的运行需要的文件,分别是store.txt,mot.txt,和NLR-Annotator-v2.1b.jar 需要java jdk1.6及以上 java-Xmx8G-jar~/soft/NLR-Annotator/NLR-Annotator-v2.1b.jar-i nense.genome.chr.fa-x~/soft/NLR-Annotator/mot.txt-y~/soft/...
NLR-Annotator 是Steuernagel利用JAVA开发用以从基因组DNA序列上直接鉴定NLR loci的工具,相关成果发表在Plant physiology上The NLR-Annotator Tool Enables Annotation of the Intracellular Immune Receptor Repertoire - PubMed (nih.gov) NLR-Annotator主要包含三个jar文件,ChopSequence.jar, NLR-Annotator.jar, NLR-Par...
nlr突变表现共分离,说明 rwt3 nlr候选基因与无毒基因 pwt3诱发的抗病性有关。 rwt4的候选 nlr基因附近包含一个小麦串联激酶基因( wtk ),该基因是抗白粉病基因 pm24的等位基因,因此作者将 wtk和 nlr基因均作为 rwt4的候选基因。采取...
There were significantly more SNPs and InDels within the identified NLR R-gene candidates than in other types of gene. The genome-wide locations of candidate R-genes and their associated markers are presented here for the potential future development of improved disease-resistant varieties. ...
The encoding genes of plant intracellular nucleotide-binding site (NBS) and leucine-rich repeat (LRR) domain receptors (NLRs) often exist in the form of a gene cluster. Several recent studies demonstrated that the truncated Toll/interleukin-1 receptor-NB
Although there are a number of bioinformatic tools to identify plant nucleotide-binding leucine-rich repeat (NLR) disease resistance genes based on conserved protein sequences, only a few of these tools have attempted to identify disease resistance genes that have not been annotated in the genome....
Helper NLR proteins NRC2a/b and NRC3 but not NRC1 are required for Pto-mediated cell death and resistance in Nicotiana benthamiana. New Phytol. 2016;209:1344–52. Article PubMed Google Scholar Van der Hoorn RA, Laurent F, Roth R, De Wit PJ. Agroinfiltration is a versatile tool that ...
and transcriptional reprogramming45. Many DEGs related to most of these elements were identified inMrRPV1-transgenic Shiraz. Because most of these elements are shared between PRR and NLR signaling, the zigzag model of the plant immune system defined a threshold for the activation of HR2rather than...
The protein鈥損rotein interaction analysis revealed functional enrichment of NLR proteins in regulating hypersensitive, immune, and stress responses. This study, the first to identify and characterize NBS genes inC. quinoa, reveals their contribution to disease response and divulges their dynamic ...
The genome of Arabidopsis thaliana contains about 150 genes encoding NLR proteins, but few of them have been studied. We transiently expressed a series of NBS-LRR proteins in the leaves of Nicotiana benthamiana, and found that the CC-NBS-LRR protein (AT1G12290) was able to trigger cell ...