With theCmirCinitiative, we initially developed a comprehensive database to identify copy number variation (CNV) driven clustered miRNAs in cancer. Now, we extended the analysis and identified three miRNAs, mir-96, mir-183, and mir-21, were found to be significantly upregulated in 17 cancer ...
An integrative multi-omics database is needed urgently, because focusing only on analysis of one-dimensional data falls far short of providing an understanding of cancer. Previously, we presented DriverDB, a cancer driver gene database that applies published bioinformatics algorithms to identify driver...
leaves, ovaries, and the tender fruits of ‘Hangzhou Gourd’. Currently, the transcriptomics data has been integrated into the GourdBase genome database, which provides a simple platform for visualizing the expression data of one particular gene and as part of...
Project3. 肝癌多组学信息数据库 Database of Multi-omics for Liver Cancer 以The Cancer Genome Atlas (TCGA)和Liverome数据库为基础，搜集肝癌病例的临床信息、基因组信息（包括raw sequence, SNP, Copy number variation 等），转录组信息（包括癌和癌旁的基因表达数据），以及蛋白质组信息，构建较为完整的专门...
Another database, G2SBC [16] (Genes-to-Systems Breast Cancer) is an integrated data source of genes, transcripts, and proteins of breast cancer cell lines described in the literature. 另一个数据库G2SBC16是文献中描述的乳腺癌细胞系的基因、转录本和蛋白质的综合数据源。
MODEM is a comprehensive database of maize multidimensional omics data, including genomic, transcriptomic, metabolic and phenotypic information from the cellular to individual plant level. This initial release contains approximately 1.06 M high quality SNPs for 508 diverse inbred lines obtained by combining...
python diversity plotly protein dask fastq k-mer-counting k-mer-frequency divideandconquer metagenomic-analysis metatranscriptomic-analysis kmer-frequency-count nucleotides diversity-estimation database-independent-analysis multiomics multiomics-data Updated Jun 12, 2024 HTML AAnzel / MOVIS Star 10 Code...
The Pear Genomics Database (PGDB, http://pyrusgdb.sdau.edu.cn) is an online data analysis and query resource that integrates comprehensive multi-omics data for pear. This database is equipped with user-friendly interactive functional modules and data visualization tools, and constitutes a convenien...
The Multi-Omics Profiling Expression Database (MOPED, http://moped.proteinspire.org ) version 2.5 is a freely accessible multi-omics expression database. Continual improvement and expansion of MOPED is driven by feedback from the Life Sciences Community. In order to meet the emergent need for ...
(methylation, phosphorylation, or glycosylation) that may strongly affect protein functions commonly overlooked by other “omics” techniques54. Currently, there is an increase in the amount of proteomics data in public repositories, which has continued to grow at an unprecedented rate55,56. ...