Results: Here, we built a Multi-omics Database for Setaria italica (MDSi, http://sky.sxau.edu.cn/MDSi.htm), that contains xiaomi genome of 161,844 annotations, 34,436 protein-coding genes and their expression information in 29 different tissues of xiaomi (6) and JG21 (23) samples that...
An integrative multi-omics database is needed urgently, because focusing only on analysis of one-dimensional data falls far short of providing an understanding of cancer. Previously, we presented DriverDB, a cancer driver gene database that applies published bioinformatics algorithms to identify driver...
leaves, ovaries, and the tender fruits of ‘Hangzhou Gourd’. Currently, the transcriptomics data has been integrated into the GourdBase genome database, which provides a simple platform for visualizing the expression data of one particular gene and as part of...
In this paper, we present the Multi-Omics Breast Cancer Database (MOBCdb), a simple and easily accessible repository that integrates genomic, transcriptomic, epigenomic, clinical, and drug response data of different subtypes of breast cancer. 在本文中,我们介绍了多组学乳腺癌数据库(MOBCdb),这是一...
MODEM is a comprehensive database of maize multidimensional omics data, including genomic, transcriptomic, metabolic and phenotypic information from the cellular to individual plant level. This initial release contains approximately 1.06 M high quality SNPs for 508 diverse inbred lines obtained by combining...
(methylation, phosphorylation, or glycosylation) that may strongly affect protein functions commonly overlooked by other “omics” techniques54. Currently, there is an increase in the amount of proteomics data in public repositories, which has continued to grow at an unprecedented rate55,56. ...
The Pear Genomics Database (PGDB, http://pyrusgdb.sdau.edu.cn) is an online data analysis and query resource that integrates comprehensive multi-omics data for pear. This database is equipped with user-friendly interactive functional modules and data visualization tools, and constitutes a convenien...
miRTarBase (Chou et al., 2016), a database that contains experi- mentally validated interactions between miRNA and target genes. In order to ensure the creation of a highly confident interaction net- work, we only used interactions supported by experimental evi- dence. If an interaction was pre...
To this end, we constructed ZEAMAP (http://www.zeamap.com), a comprehensive database incorporating multiple reference genomes, annotations, comparative genomics, transcriptomes, open chromatin regions, chromatin interactions, high-quality genetic variants, phenotypes, metabolomics, genetic maps, genetic ...
However, there is still a lack of databases designed for interactively exploring the single-cell multi-omics data of human pan-cancer, especially for the single-cell epigenome data. To fill in the gap, we developed scCancerExplorer, a comprehensive and user-friendly database to facilitate the ...