Mouse RNA-Seq data with two conditions, four samplesPanagiotis Moulos
Gene functionality is closely connected to its expression specificity across tissues and cell types. RNA-Seq is a powerful quantitative tool to explore genome wide expression. The aim of this study is to provide a comprehensive RNA-Seq dataset across the same 13 tissues for mouse and rat, two ...
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RNA sequencing (RNA-seq) is the leading technology for genome-wide transcript quantification. However, publicly available RNA-seq data is currently provided mostly in raw form, a significant barrier for global and integrative retrospective analyses.
RNA-sequencing was performed on liver samples 6 weeks post surgery. Differential gene expression was assessed using DESeq2 and changes in gene sets using Gene set enrichment analyses (GSEA). Quantitative Real Time PCR was used to validate select differently expressed genes, as well as to assess ...
In this work, we further identified highly expressed genes by H3K4me3 mark or by both H3K4me3 and H3K4me1 marks in mouse liver using ChIP-Seq and RNA-Seq. We found that in mice, the liver carries embryonic stem cell-related functions while the embryonic stem cell also carries liver-related...
Circular RNAs (circRNAs) are a new class of non-polyadenylated non-coding RNAs that may play important roles in many biological processes. Here we develop a single-cell universal poly(A)-independent RNA sequencing (SUPeR-seq) method to sequence both poly
The main goals of the study were to determine associations across inflammatory markers in people with DS in comparison to euploid controls (D21) using RNA sequencing (RNA-seq) and multiplexed immunoassays. Research participants were enrolled in the Crnic Institute Human Trisome Project Biobank (HTP...
(a) The novel intergenic transcript model CUFF.8454.1 has been inferred from mouse RNA-seq data in a region of the mouse genome without gene annotations. Mapping of this transcript model to the human genome reveals that it is the homologue of the lncRNA RP11-739N20.1 annotated in the human...
specific trait. However, as the genomic sequence of many of these strains is not available yet, utilization of these resources has been hampered. We demonstrated here that the high throughput transcriptome analysis by RNA-Seq provides an effective way for utilizing the potential of selected strains...