ALLEN Mouse Brain Connectivity AtlasTECHNICAL WHITE PAPER ALLENTECHNICAL WHITE PAPER ALLEN
brain and behaviour. The cellular diversity of the brain necessitates a cellular resolution approach towards understanding the functional genomics of the nervous system. We describe here an anatomically comprehensive digital atlas containing the expression ...
This report presents a pipeline to construct a flexible annotation atlas (FAA) for the mouse brain, for which brain structures can be combined or divided objectively using resources by AIBS on gene expression and fiber projection. Total ROI counts of FAA can vary from 1 to more than 1000. Co...
The Allen Brain Atlas The Allen Brain Atlas is an online publicly available resource that integrates gene expression and connectivity data with neuroanatomical information for the mouse, human, and non-human primate. Launched in 2004 by the Allen Institute fo... M Hawrylycz,L Ng,D Feng,... ...
To facilitate the use of our single-cell datasets, an online tool was generated for evaluation of gene expression at single-cell resolution:www.brainimmuneatlas.org. All gene–cell count matrices can also be downloaded via this link. In addition, all scRNA-seq and bulk RNA-seq data are also...
Atlas of prenatal rat brain development Joseph Altman, Shirley A. Bayer ; with the assistance of Clark Gedney ... [et al.] CRC Press, c1995 Kazuo C/O Shikoku Kakoki Co. Ltd. Ueda - 《Crc Pr Inc》 被引量: 558发表: 1995年 Transcriptional landscape of the prenatal human brain The anat...
Here we describe a framework that maps each slice to its corresponding plane in the Allen Mouse Brain Atlas (2015) to build a plane-wise mapping and then perform 2D nonrigid registration to build a pixel-wise mapping. We use the L2 norm of the histogram of oriented gradients difference of ...
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain Article Open access 13 December 2023 Single-cell transcriptomic landscape of the developing human spinal cord Article 24 April 2023 Spatially resolved cell atlas of the mouse primary motor cortex by MERFIS...
Anatomical atlases in standard coordinates are necessary for the interpretation and integration of research findings in a common spatial context. However, the two most-used mouse brain atlases, the Franklin-Paxinos (FP) and the common coordinate framewor
[1]#get the slide that has the desired brain region and coordinates of the center of the regionimageID=structureToImage(datasetID=datasetID,regionIDs=granuleID)#get the closest atlas image.atlasID=imageToAtlas(imageID$section.image.id,imageID$x,imageID$y,planeOfSection='sagittal')#decide ...