Punta M, Forrest LR, Bigelow H, Kernytsky A, Liu J, Rost B. Membrane protein prediction methods. Methods. 2007; 41 (4):460–74. doi: 10.1016/j.ymeth.2006.07.026. [ Cross Ref ]Punta M, Forrest LR, Bigelow H, Kernytsky A, Liu J, et al. Membrane protein prediction methods. ...
Feature extraction is a key step in membrane protein function prediction, and multifeature fusion not only enhances their complementary but also improves the model prediction performance. Siva et al.4used pseudoamino acid composition (PseAAC), amino acid composition (AAC), and physical and chemical p...
membrane protein predictionneural networkhidden Markov modelsgenome structural annotationNew methods, essentially based on hidden Markov models (HMM) and neural networks (NN), can predict the topography of both -barrel and all- membrane proteins with high accuracy and a low rate of false positives ...
Rapid membrane protein topology prediction State-of-the-art methods for topology of 卤-helical membrane proteins are based on the use of time-consuming multiple sequence alignments obtained from PSI... H Aron,E Arne - 《Bioinformatics》 被引量: 102发表: 2011年 Rapid membrane protein topology pre...
Adamian L, Liang J:Prediction of buried helices in multispan alpha helical membrane proteins. RANTS: http://gila.bioengr.uic.edu/lab.Proteins2006,63:1–5. 10.1002/prot.20874 ArticleCASPubMedGoogle Scholar White SH:The progress of membrane protein structure determination.Protein Sci2004,13:1948...
Prediction of membrane proteins in post-genomic era The current status of the prediction methods of membrane proteins in the post-genomic era is described. In the first section, prediction methods of transme... D Kihara,M Kanehisa 被引量: 7发表: 2001年 The prediction of protein subcellular ...
Membrane protein prediction was achieved using the DAVID Bioinformatics Resources (http://david.abcc.ncifcrf.gov/)(42) and the Gene Ontology (GO) annotation (www.geneontology.org) and the TransMembrane Hidden Markov Model (TMHMM, http://www.cbs.dtu.dk/services/TMHMM/). We used PANTHER (...
Test #1: prediction of membrane protein orientation and insertion energy Membrane proteins are thermodynamically stable in the bilayer because of a favorable orientation and insertion energy. Therefore, implicit membrane energy functions must accurately estimate these quantities. First, we evaluated the parti...
The prediction of transmembrane (TM) helix and topology provides important information about the structure and function of a membrane protein. Due to the experimental difficulties in obtaining a high-resolution model, computational methods are highly desirable. In this paper, we present a hierarchical ...
Moller S, Croning MD, Apweiler R:Evaluation of methods for the prediction of membrane spanning regions.Bioinformatics2001,17(7):646–653. ArticleCASPubMedGoogle Scholar Chen CP, Rost B:State-of-the-art in membrane protein prediction.Appl Bioinformatics2002,1(1):21–35. ...