首先要将工作目录切换到输入文件所在目录,然后运行如下命令: $ python -m jcvi.compara.catalog ortholog grape peach20:33:42 [base] lastdb peach peach.cds20:34:13 [base] lastal -u 0 -P 64 -i3G -f BlastTab peach grape.cds >grape.peach.last20:34:30 [synteny] Assuming --qbed=grape.bed ...
Python3 -m jcvi.compara.catalog ortholog Arabidopsis_thaliana youcai--cscore=0.99 --no_strip_names Python3 -m jcvi.compara.catalog ortholog youcai Brassica_rapa--cscore=0.99 --no_strip_names Python3 -m jcvi.compara.catalog ortholog youcai ganlan--cscore=0.99 --no_strip_names Python3 -m...
$ python -m jcvi.compara.catalog ortholog grape peach 20:33:42 [base] lastdb peach peach.cds 20:34:13 [base] lastal -u 0 -P 64 -i3G -f BlastTab peach grape.cds >grape.peach.last 20:34:30 [synteny] Assuming --qbed=grape.bed --sbed=peach.bed 20:34:31 [blastfilter] Load B...
I use MCScanX to ananlyze Synteny and obtain the results. Then I use MCscan python version to visualize . As you know McScanX use blast to analyze similarity however MCscan python version is not . I want to know to whether the gene Synteny results is very different between the two results...
MCScanXpython版本MCScanX分析方法 https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version) python版本MCScanX分析方法,仅供参考: Genomic synteny among C. annuum, C.chinenese and C.baccatum The genomes of C. annuum, C.chinenese and C.baccatum were retrieved from PGP (http://pepper...
Python 版mcscanx出现AttributeError: 'LayoutLine' object has no attribute 'order'$ python2.7 -m ...
请问mcscanx做基因组间分析时，有以下报错是什么原因呢？是因为Python环境不到位输入的bed文件和cds文件...
python 版本的MCScanX分析物种之间分共线性时，运行里面的例子时，出现报错信息输入文件有问题吧，你打开...
老师，在MCScanX共线性分析中，我用学校的服务器，请问用python的mcscan如何进行这一步的分析啊。你学校...