首先要将工作目录切换到输入文件所在目录,然后运行如下命令: $ python -m jcvi.compara.catalog ortholog grape peach20:33:42 [base] lastdb peach peach.cds20:34:13 [base] lastal -u 0 -P 64 -i3G -f BlastTab peach grape.cds >grape.peach.last20:34:30 [synteny] Assuming --qbed=grape.bed ...
Python3 -m jcvi.compara.catalog ortholog Arabidopsis_thaliana youcai--cscore=0.99 --no_strip_names Python3 -m jcvi.compara.catalog ortholog youcai Brassica_rapa--cscore=0.99 --no_strip_names Python3 -m jcvi.compara.catalog ortholog youcai ganlan--cscore=0.99 --no_strip_names Python3 -m...
$ python -m jcvi.compara.catalog ortholog grape peach 20:33:42 [base] lastdb peach peach.cds 20:34:13 [base] lastal -u 0 -P 64 -i3G -f BlastTab peach grape.cds >grape.peach.last 20:34:30 [synteny] Assuming --qbed=grape.bed --sbed=peach.bed 20:34:31 [blastfilter] Load B...
To call synteny blocks, we performed all-against-all LAST [2] and chained the LAST hits with a distance cutoff of 20 genes, also requiring at least 4 gene pairs per synteny block. Chromosome-scale synteny blocks plots were constructed using the python version of MCScan[3]. [1] Tang H, ...
Python 版mcscanx出现AttributeError: 'LayoutLine' object has no attribute 'order'$ python2.7 -m ...
python 版本的MCScanX分析物种之间分共线性时，运行里面的例子时，出现报错信息输入文件有问题吧，你打开...
请问mcscanx做基因组间分析时，有以下报错是什么原因呢？是因为Python环境不到位输入的bed文件和cds文件...
老师，在MCScanX共线性分析中，我用学校的服务器，请问用python的mcscan如何进行这一步的分析啊。你学校...