Maximum-likelihood phylogenetic tree.Damian, R. MichaelSam, C. BanksMaxine, P. PiggottRoss, B. CunninghamMason, CraneChristopher, MacGregorLachlan, McBurneyDavid, B. Lindenmayer
Maximum likelihood phylogenetic tree based on COI gene sequences.Régis, Vivien
Cibiv/IQ-TREE Star187 Efficient phylogenomic software by maximum likelihood phylogeneticsmodel-selectionmixture-modelmaximum-likelihoodphylogenomicsiq-treeultrafast-bootstrap UpdatedNov 4, 2021 C++ stan-dev/cmdstanr Sponsor Star144 CmdStanR: the R interface to CmdStan ...
The first formulation obtains a maximum likelihood estimate of the viral population given the observed paired-end reads. The second formulation obtains a minimal set of viral haplotypes retaining the phylogenetic information in the population. We evaluate our algorithm on simulated datasets varying on ...
TREE-PUZZLE is a program package for quartet-based maximum-likelihood phylogenetic analysis (formerly PUZZLE, Strimmer and von Haeseler, Mol Biol. Evol., 13, 964-969, 1996) that provides methods for reconstruction, comparison, and testing of trees and models on DNA as well as protein sequence...
RAxML outperforms those programs for real-world data in terms of speed and final likelihood values.Technische Universitaet Muenchen, Department of Computer Science Boltzmannstr. 3, 85748 Garching b. Muenchen, GermanyJoint HLRB(Hochstleistungsrechner in Bayern) and KONWIHR(Competence Network for ...
Two approximate methods are proposed for maximum likelihood phylogenetic estimation, which allow variable rates of substitution across nucleotide sites. Three data sets with quite different characteristics were analyzed to examine empirically the performance of these methods. The first, called the "discrete...
A Mixed Branch Length Model of Heterotachy Improves Phylogenetic Accuracy likelihoods over multiple sets of branch lengths on the same tree鈥攁nd the covarion model, which uses a hidden Markov process to allow sites to ... K Bryan,JW Thornton - 《Molecular Biology & Evolution》 被引量: 222...
Otherwise, either the linear regression or maximum likelihood methods provide inaccurate estimates of the relevant source area and parameters even when the ... S Sugita - 《Journal of Ecology》 被引量: 1807发表: 1994年 Maximum-Likelihood Phylogenetic Analysis Under a Covarion-like Model Here, a ...
An interesting and important, but largely ignored question associated with the ML method is whether there exists only a single maximum likelihood point for a given phylogenetic tree. Mike Steel presented a simple analytical result to argue that the ML point is not unique [11]. However, his view...