Maximum-likelihood phylogenetic tree, sequences alignment, expression and detection of plasma HIV RNA-derived Vpu clonal alleles.Jingyan ChenNadine TibroniDaniel SauterJohanna GalaskiToshiyuki MiuraGalit AlterBirthe MuellerClaudia HallerBruce D. Walker...
The first formulation obtains a maximum likelihood estimate of the viral population given the observed paired-end reads. The second formulation obtains a minimal set of viral haplotypes retaining the phylogenetic information in the population. We evaluate our algorithm on simulated datasets varying on ...
求翻译:A phylogenetic tree constructed by the maximum likelihood是什么意思?待解决 悬赏分:1 - 离问题结束还有 A phylogenetic tree constructed by the maximum likelihood问题补充:匿名 2013-05-23 12:21:38 的最大似然构建的系统树 匿名 2013-05-23 12:23:18 一个建造phylogenetic树的最大可能性 匿...
Maximum likelihood phylogenetic tree based on COI gene sequences.Régis, Vivien
Maximum likelihood phylogenetic analyses based on both ITS and β-tubulin sequence data place P. mercuriale in a clade between Pythium and Phytophthora ... B Lassaad,McLeod Adèle,P Bernard,... - 《Fems Microbiology Letters》 被引量: 83发表: 2010年 Vacuolating Cytotoxin ( vacA ) Alleles of ...
Maximum Likelihood (ML) phylogenetic tree showing the relationship of the new VHSV G-gene sequences (indicated in red) and other VHSV genotype representati... S Nina,G Britt,Øivind, Bergh,... 被引量: 0发表: 2014年 Protective immunity to VHS in rainbow trout (Oncorhynchus mykiss, Walbaum...
TREE-PUZZLE is a program package for quartet-based maximum-likelihood phylogenetic analysis (formerly PUZZLE, Strimmer and von Haeseler, Mol Biol. Evol., 13, 964-969, 1996) that provides methods for reconstruction, comparison, and testing of trees and models on DNA as well as protein sequence...
The likelihood value, L, used in phylogenetic inference is the probability of observing the data (e.g., a set of aligned nucleotide sequences) under a given phylogenetic tree and a specified model of evolution: L = Pr(data | tree, model). ML is used in phylogenetics to find the ...
Phylogenetic trees are essential for studying biology, but their reproducibility under identical parameter settings remains unexplored. Here, we find that 3515 (18.11%) IQ-TREE-inferred and 1813 (9.34%) RAxML-NG-inferred maximum likelihood (ML) gene trees are topologically irreproducible when executing...
Maximum likelihood (ML) is a popular method for inferring a phylogenetic tree of the evolutionary relationship of a set of taxa, from observed homologous aligned genetic sequences of the taxa. Generally, the computation of the ML tree is based on numerical methods, which in a few cases, are...