( 2005 ) Maximum-likelihood methods for phylogeny estimation . Molecular Evolution: Producing the Biochemical Data, Part B. Methods in Enzymology , 395 , 757 – 779 .Sullivan, J., 2005. Maximum-likelihood methods for phylogeny estimation. Methods Enzymol. 395, 757-779....
Left—500,000-sample phylogeny estimated by MAPLE from real SARS-CoV-2 sequence data. Center—zoom-in on a subtree containing 3,600 B.1.177 samples. Right—further zoom-in on a subtree containing 49 samples. Phylogenies were plotted using Taxonium45. Full size image matOptimize35 (a recent...
Maximum-likelihood methods for phylogeny estimation. 来自 Semantic Scholar 喜欢 0 阅读量: 30 作者: J Sullivan 摘要: Maximum-likelihood (ML) estimation of phylogenies has reached a rather high level of sophistication because of algorithmic advances, improvements in models of sequence evolution, and ...
Maximum likelihood phylogeny of 161 diatoms (with bootstrap values at nodes) was inferred from a concatenated alignment of SSU rRNA, rbcL and psbC markers.Chun, L. LiMatt, P. AshworthAndrzej, WitkowskiPrzemysław, DąbekLinda, ...
Phylogeny of Mixture Models: Robustness of Maximum Likelihood and Non-identifiable Distributions We address phylogenetic reconstruction when the data is generated from a\nmixture distribution. Such topics have gained considerable attention in the\nbiological community with the clear evidence of heterogeneity...
Plastid Genome Phylogeny and a Model of Amino Acid Substitution for Proteins Encoded by Chloroplast DNA Maximum likelihood (ML) phylogenies based on 9,957 amino acid (AA) sites of 45 proteins encoded in the plastid genomes of Cyanophora, a diatom, a rhodophy... J Adachi,PJ Waddell,W Martin...
CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models. Markov models of codon substitution naturally incorporate the structure of the genetic code and the selection intensity at the protein level, providing a m... Manuel,Gil,Marcelo,... - 《Molecular Biology & ...
2009. PROCOV: maximum likelihood esti- mation of protein phylogeny under covarion models and site-specific covarion pattern analysis. BMC Evol Biol. 9:225.Wang H-C, Susko E, Roger AJ. 2009. PROCOV: maximum likelihood estimation of protein phylogeny under covarion models and site- specific ...
关键词: Phylogeny Maximum likelihood Rate variation over sites The gamma distribution Approximate methods DOI: 10.1007/BF00160154 被引量: 6934 年份: 1994 收藏 引用 批量引用 报错 分享 全部来源 免费下载 求助全文 全文购买 Springer 国家科技图书文献中心 (权威机构) Wiley 万方医学 Semantic Scholar 查看...
A maximum likelihood method for inferring protein phylogeny was developed. It is based on a Markov model that takes into account the unequal transition probabilities among pairs of amino acids and does not assume constancy of rate among different lineages. Therefore, this method is expected to be ...