The raw reads of RNA-seq were downloaded from the NCBI’s GEO (Gene Expression Omnibus) database (GEO accession number: GSE71723). Detailed information about these 96 maize RNA-seq data sets can be found in the previous paper23. We note that two of the 96 RNA-seq data sets (one for...
The invention discloses a method for high-throughput screening of a maize reference gene. The method comprises the following steps: by using a high-throughput transcriptome sequencing (RNA-seq) database which is sourced from different maize inbred lines with high diversity, different tissues and ...
4e). In sum, these data collectively support the notion that BON1, BON2, and BON3 function redundantly in regulating BR signaling in Arabidopsis. Fig. 4: RNA-seq analysis of Col-0, bak1-4, pad4-1, and bon1-1 bon2-2 bon3-3 pad4-1 after mock or eBL treatment. a, d Bubble ...
In this study, candidate genes of the AP2/ERF superfamily were firstly obtained through the maize genomic database. Then, all protein sequences of these putativeZmAP2/ERFgenes were further confirmed by SMART search and NCBI-CDD web server for the existence of AP2/ERF domain. Finally, a tota...
Ear Height (cm) (to base of top ear 072.0<$1 td> Length of Top Ear Internode (cm) 015.7 0.8 014.1 1.5 Number of tillers 0.0 0.0 0.0 0.1 Ears per stalk 1.1 0.2 1.2 0.3 Leaf data Width of ear node leaf (cm) 009.3 0.4 008.4 0.3 Length of ear node leaf (cm) 075.8 3.6 081.7 7....
RNA-seq data of three types of roots (CR, PR, and SR) under salt stress were fetched from GEO database at NCBI under the corresponding accession number GSE53995. Normalized signal intensity values were log-transformed for further analysis. Moreover, 2-fold change was used to test the diffe...
Small RNA (sRNA) has been described as a regulator of gene expression. In order to understand the role of maize sRNA (Zea mays – hybrid UENF 506-8) during association with endophytic nitrogen-fixing bacteria, we analyzed the sRNA regulated by its associ
Effects of drought on gene expression in maize reproductive and leaf meristem tissue revealed by RNA-Seq. Plant Physiol. 2012, 160, 846–867. [Google Scholar] [CrossRef] [PubMed] Thirunavukkarasu, N.; Sharma, R.; Singh, N.; Shiriga, K.; Mohan, S.; Mittal, S.; Mittal, S.; ...
Hence, generating RNA-seq data from multiple time points of maize endosperm enable us to accessibly investigate the allele-specific imprinting. The regulatory mechanism and potential function of ASIGs Imprinted genes are frequently involved in energy metabolism and seed development. The theory of ...
Structural variants (SVs) significantly drive genome diversity and environmental adaptation for diverse species. Unlike the prevalent small SVs (< kilobase-scale) in higher eukaryotes, large-size SVs rarely exist in the genome, but they function as on