FASTXFASTXToolkit is a set of command line tools to manipulate reads in filesFASTAorFASTQformat. These commands make possible preprocess the files before mapping with tools like Bowtie. Some of the tasks allowed are: conversion from FASTQ to FASTA format, information about statistics of quality, ...
ANALYSIS OF SINGLE CELL RNA-SEQ DATA course by Orr Ashenberg, Dana Silverbush, Kirk Gosik Tutorials Single-cell RNA-seq data analysis workshop by the Harvard Chan Bioinformatics Core. Lessons - hands-on Introduction to single-cell RNA-seq analysis using Seurat/RStudio, starting from count mat...
awosome-bioinformatics Abstract: A curated list of resources for learning bioinformatics. Some of this repo resources were collected by BioInstaller project. You can use BioInstaller to directly download the source code or database files, or fetch the meta information by BioInstaller::get.meta()$...
displays a graphical 2D representation of the variable region. It can also interact with additional IMGT tools for more detailed analysis via an option on the Search page for a detailed analysis, and via a link on the result page for the phylogenetic analysis of the variable region of input ...
In this work, we have explored biophysical and biochemical meaning of this space. In addition, in variety of bioinformatics tasks we have shown the strength of such a sequence representation."pysster: Learning Sequence and Structure Motifs in DNA and RNA Sequences using Convolutional Neural ...
Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq. Human proteomic databases required for MS peptide identification are frequently updated and carefully curated, yet are still incomplete because it has been... M Gloria,Sheynkman,R Michael,... - 《Molecular ...
开发者ID:BioinformaticsArchive,项目名称:cgat,代码行数:34,代码来源:pipeline_proj012_chipseq.py 示例9: findGenes ▲点赞 1▼ # 需要导入模块: from CGAT import Pipeline [as 别名]# 或者: from CGAT.Pipeline importasList[as 别名]deffindGenes(infile, outfile):'''Adds expression "GENE_OF_INTEREST...
In bioinformatics analysis, many different tools and databases are combined in order to detect relevant findings. This adds an extra layer of complexity which often leads to reproducibility issues. Because of this, since 2011 all the past releases of g:Profiler are maintained and kept usable to ...
FIMO and MCAST perform best of TFBS predictors: http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1298-9 Intra-motif dependencies Identifying http://www.jstacs.de/index.php/InMoDe Visualizing http://bioinformaticstools.mayo.edu/circularlogo/index.html Dinucleotide weight tensors...
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. - seandavi/awesome-single-cell