You can use Homebrew (brew) to install, uninstall, and upgrade any of thousands of “formulae” (i.e. package definitions) from its core public repository, plus anytaprepositories you care to use. You can also
Figure Supplementary 1 Experimental data analyzed according to a PCA. Data were normalized on the basis of the size of each library and, on the basis of the normalized read cou... Supplementary material Supplementary Table 1. Primer sequences used in real-time PCR Supplementary material ...
You need a suitable software like FastQC to open an FQ file. Without proper software you will receive a Windows message "How do you want to open this file?" or "Windows cannot open this file" or a similar Mac/iPhone/Android alert. If you cannot open your FQ file correctly, try to ri...
A tutorial on how to set up a Linux environment on a computer running Windows 10. Followed by how to install and use (bio)conda.I started this tutorial on a Twitter thread but after a suggestion, decided to create a repository to document everything. This way people can comment, suggest...
fastqc libosmium pushpin znc==>Deleted Formulae artifactory-cli-go boot2docker-completion ghc@8.0gpg-agent wry boot2docker dirmngr gnupg@2.0node@4==>Installing dependenciesforwget: gettext, libunistring, libidn2, openssl==>Installing wget dependency: gettext==>Downloading https://homebrew.bintray...
fastqc libosmium pushpin znc==>Deleted Formulae artifactory-cli-go boot2docker-completion ghc@8.0gpg-agent wry boot2docker dirmngr gnupg@2.0node@4==>Installing dependenciesforwget: gettext, libunistring, libidn2, openssl==>Installing wget dependency: gettext==>Downloading https://homebrew.bintray...
We evaluated the use of DTT through 16s rRNA real-time PCR in terms of (1) median levels, in order to understand if the presence of DTT was increasing bacterial DNA recovery; and (2) the coefficient of variation between replicates, in order to understand if the presence of DTT was able...
, always include a pre-processing step in which the raw reads are quality checked, trimmed, and cleaned, allowing reads to be used in the next steps. Widely accepted external tools for this step are, for example, FastQC, Cutadapt, and Trimommatic. In the next step, these clean sRNA ...