chmod u+x fastqc #chmod 754 fastqc 4.配置环境变量 vim ~/.bashrc export PATH=$PATH:/home/zhou/bio_solfware/FastQC/# 添加至文件最后一行,注意这个是整个文件夹 source~/.bashrc#使配置文件生效 5. 下载Java 5.1 下载Java, sudo apt install openjdk-8-jdk 5.2 查看Java是否安装成功 Java -version. ...
option will cause fastqc to crash and burn if you use it on really long reads, and your plots may end up a ridiculous size. You have been warned! --min_length Sets an artificial lower limit on the length of the sequence to be shown in the report. As long as you set this to a v...
运行下载好的脚本bash Miniconda3-版本号-Linux-x86\_64.sh进行安装遵循提示完成安装,看到Thank you for installing XXX表示成功安装安装完成后,运行...安装新软件:例如,conda install fastqc -y或conda install fastqc=版本号 -y检查软件是否安装成功:运行fastqc --help,成功则有大段文字。...卸载软件:conda ...
FastQC是一个java应用程序。为了运行它,需要您的系统安装合适的Java运行时环境。因此,在尝试运行FastQC之前,应该确保有一个合适的Java运行时环境。 $java-versionopenjdk version"1.8.0_192"OpenJDK Runtime Environment(Zulu8.33.0.1-linux64)(build1.8.0_192-b01)OpenJDK64-Bit Server VM(Zulu8.33.0.1-linux64)...
fastqc_install(): Install the latest version of FastQC tool on Unix systems (MAC OSX and Linux) fastqc(): Run the FastQC tool from R. 2) Aggregating and Summarizing Multiple FastQC Reports qc <- qc_aggregate(): Aggregate multiple FastQC reports into a data frame. ...
source code for the application and is only really useful only to people wanting to develop new functionality or trace bugs in FastQC. If you just want to run the program then you want to go to theproject web pagewhere you can download the compiled pacakges for Windows, OSX and Linux....
This seems to be a bug when installing fastqc using apt-getinstall fastqc on some versionsofUbuntu. 所以我就去了我的生物信息学常见1000个软件的安装代码:https://www.jianshu.com/p/ae28e8e3e9f5 找到了fastqc软件下载安装方法: 代码语言:javascript ...
fastqc_install(): Install the latest version of FastQC tool on Unix systems (MAC OSX and Linux) fastqc(): Run the FastQC tool from R. 2) Aggregating and Summarizing Multiple FastQC Reports qc <- qc_aggregate(): Aggregate multiple FastQC reports into a data frame. summa...
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pkgs/main/linux-64[===](00m:00s)Nochange pkgs/main/noarch[===](00m:00s)Nochange anaconda/cloud/bioconda/[===](00m:03s)Doneanaconda/cloud/bioconda/[===](00m:03s)Doneanaconda/cloud/conda-for[===](00m:09s)Doneanaconda/cloud/conda-for[===](00m:17s)DoneTransactionPrefix:/home...