在ubuntu使用aptinstall的fastqc是有bug的 为了方便十几个新手使用云服务器,我取巧的root权限安装了一堆生物信息学软件,代码如下: sudo apt install -y fastqc sudo apt install -y samtools sudo apt install -y bcftools sudo apt install -y bwa sudo apt install -y ncbi-blast+ sudo apt install -y sra...
This seems to be a bug when installing fastqc using apt-getinstall fastqc on some versionsofUbuntu. 所以我就去了我的生物信息学常见1000个软件的安装代码:https://www.jianshu.com/p/ae28e8e3e9f5 找到了fastqc软件下载安装方法: 代码语言:javascript 复制 ## Download and install fastqc cd~/biosoft m...
Files master 01PPT age binning cancer history makefile result result12 seq temp .gitignore 0Install.sh 1Pipeline.sh 2StatPlot.sh 2StatPlot_mac.sh 3Init.sh EasyMetagenome.Rproj LICENSE README.md
http://data.biostarhandbook.com/install.sh | bash maybe the best is to start with a clean Unix system. Uninstall Ubuntu and reinstall it. It is sad though that conda itself is incapable of working corretly, the whole point of it was supposed to avoid these problems. Author BIOSTARFANcomme...
fastqc -v # v0.12.1 kneaddata --version # 0.12.0 trimmomatic -version # 0.39 bowtie2 --version # 2.5.1 multiqc --version # 1.14 # (可选)安装软件打包,生成上方下载压缩包 n=kneaddata # f可覆盖输出文件,ignore可以跳过修改检测 conda pack -f --ignore-missing-files -n ${n}...
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@apetkau It looks like the snippy has been correctly installed in a snippy environment. When I run the snippy, do I have to always run in the snippy environment, and when I want to run other programs, for example, fastqc, I have to come back again to the conda environment by deactivat...