The publicly available data integrated into this study were downloaded from the GEO under accession numbers GSE81233, GSE107714 and GSE86146. The following public databases were used during the data analysis: (1) dbSNP (v.138) (https://www.ncbi.nlm.nih.gov/snp/); (2) Kyoto Encyclopedia ...
You may read the details in NCBI GEO, under the “overall design” section. Or for better understanding, it’s always good if we read the original paper…link here: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi Using GEOquery to obtain microarray data First, set the working directory....
Paramyxoviruses including measles, Nipah, and parainfluenza viruses are public health threats with pandemic potential. Human parainfluenza virus type 3 (HPIV3) is a leading cause of illness in pediatric, older, and immunocompromised populations. There ar
The compiled executables will be found in the directory corresponding to the build configuration selected (e.g.: c++\compilers\msvc800_prj\static\bin\debugdll).3. Quick start Go to: 3.1 For users of NCBI C Toolkit BLAST The easiest way to get started using these command line applications ...
Taxonomic assignments of the sequences were made by pairwise comparisons with other sequences deposited in the GenBank of the National Center for Biotechnology Information (NCBI) (http://www.ncbi.nlm.nih.gov/, accessed on 8 May 2021) using the Basic Local Alignment Search Tool (BLAST) to ...
Removal of Illumina 1st leg contigs with identical counterparts, based on function and accession number, in the Illumina 4th leg transcriptome resulted in the identification of 38,087 contigs exclusive to the 1st legs, and what will be referenced in this paper as the Haller's organ spf (...
These 116 unigenes were used for the clusters of orthologous groups (COG) functional annotation analysis [43] after BLASTX and TBLASTX against the NCBI protein databases. Among the 116 unigenes, 90 exhibited high similarity (E-value < 10-5) to known protein sequences, and 26 showed no ...
It should have a structure similar to what's shown below: ---igblast --bin --internal_data --optional_file --ChangeLog --LICENSE --ncbi_pakacage_info --README --database --Using IgBlast.ipynb Download IMGT germline sequence Germline seuqence can be found here. Both nucleic acid and...
I have some annotation data for a transcriptome where I want to split a column containing NCBI accession IDs into a... 10. Shell Programming and Scripting Split column when value in column is blank in any row Hi Experts, In short : Need to split file when field in column 5 is ...
(1951) was the first to include the use of nematocysts as a useful taxonomic criterion of the group. In several works, Picard (1951;1955;1958) distinguished eleven eudendriid Mediterranean species. Bavestrello and Piraino (1991) increased the number of Eudendriidae to 13 (12 belonging to ...