SKESAis a de-novo sequence read assembler for microbial genomes. It uses conservative heuristics and is designed to create breaks at repeat regions in the genome. This leads to excellent sequence quality without significantly compromising contiguity. If desired, SKESA contigs could be connected into ...
So to identify a taxon for a given sequence you would blast it against e.g. the NCBI nt database and load the results into R. For NCBI databases, the accession number is often the 4th item in the|(pipe) separated reference field (often the second column in a tab separated result). ...
The UniProt accession Protein name PDB accessions of associated structure files from the PDB database EC number annnotations Protein sequence from the UniProtcazy_webscraper always retrieves the UniProt accession and protein name, but the retrieval of PDB accession, EC numbers and protein sequences ...
Summary table of sequence alignment hits consisting of sequence description, total score, percentage of query coverage, e-value, identity, and accession number. Hyperlinks to alignment hit section and reference link to biological sequence database. ...
Removed or old sequences will be kept but not carried to the new version. Arguments can be added or changed in the update. For example ./genome_updater.sh -o "arc_refseq_cg" -t 2 to use a different number of threads or ./genome_updater.sh -o "arc_refseq_cg" -l "" to remove...