-free hydrophobic phase at the start, you can try to follow the advice below * Set the ``-radius` option in :ref:`gmx solvate` to change the water exclusion radius, * copy ``vdwradiidat`` from your ``$GMXLIB`` location to the working directory, and edit it to increase the...
and interacts with the γ-phosphate of the nucleotide in the initiation site. The possible change of D88 to Asn or to His observed in related AEP domains retains the capacity of divalent metal ion binding and further supports the functional nature of this position. We propose that during the...