hisat2-build报错:Error: Encountered internal HISAT2 exception (#1) 使用hisat2-build对基因组建索引时遇到如下报错: Error: Encountered internal HISAT2 exception (#1) Command: hisat2-build --wrapper basic-0 -p 8 --ss splicesites.tsv --exon exons.tsv Mus_musculus_c57bl6nj.C57BL_6NJ_v1....
hisat2-build-p8snp hisat2_snpsfasta hisat2_index 这里对SNP文件的要求是 :(https://ccb.jhu.edu/software/hisat2/manual.shtml#the-hisat2-build-indexer): 这里的格式是:rs58784443 single 13 18447947 T 每一列分别为:SNP ID <tab> snp type (single, deletion, or insertion) <tab> chromosome ...
错误信息为：可是按照hisat2的说明是这样的 但是更据报错信息中的命令却是这样，感觉乱套了 解决办法
lastret = hisat2_build((int)args.size(), myargs); free(myargs); } if(lastret == -1) { cerr << "Warning: No arg strings parsed from " << file << endl; return 0; } return lastret; } else { return hisat2_build(argc, argv); ...
Graph-based alignment (Hierarchical Graph FM index) - hisat2/hisat2_build.cpp at master · DaehwanKimLab/hisat2
hisat2-build 建立索引的时候出现Error: Encountered internal HISAT2 exception (#1) 在使用hisat2建立转录本的索引文件的时候报错 extract_exons.py hg19.gff > hg19.exons extract_splice_sites.py hg19.gff > hg19.ss hisat2-build --exon hg19.exons -ss hg19.ss -p 6 hg19.fa hg19 ...
hisat2-build -p 8 --snp hisat2_snps.txt hg19.fasta hisat2_index/ 这里对SNP文件的要求是 :(https://ccb.jhu.edu/software/hisat2/manual.shtml#the-hisat2-build-indexer): 这里的格式是:rs58784443 single 13 18447947 T 每一列分别为:SNP ID <tab> snp type (single, deletion, or insertion...
string tool_name = "hisat2-build-l"; #else string tool_name = "hisat2-build-s"; #endif if(wrapper == "basic-0") { tool_name = "hisat2-build"; }out << "Usage: hisat2-build [options]* <reference_in> <ht2_index_base>" << endl ...