GO enrichment analysis for DEGs between two lines.Peigang LiuYongqiang WangXin DuLusong YaoFengBo LiZhiQi Meng
GO enrichment analysis of DEGs between high and low oleoresin-yielding masson pines using REVIGO.doi:10.1371/journal.pone.0132624.g001L. QinghuaZhou ZhichunW. YongchengShen Dan-yuFeng Zhong-pingHong ShanpingPLOS ONE
#可视化#分析完成后,作图,自己选择喜欢的一款,一般GO分析画这两个图就可以了做成气泡图形式dotplot(go_bp)dotplot(go_cc)#做成条形图形式barplot(go_bp,showCategory=12,title="The GO_BP enrichment analysis of all DEGs ",drop=TRUE) ©著作权归作者所有,转载或内容合作请联系作者...
barplot(kk,showCategory = 25, title="The KEGG enrichment analysis of all DEGs")+ scale_size(range=c(2, 12))+ scale_x_discrete(labels=function(kk) str_wrap(kk,width = 25)) #点图 dotplot(kk,showCategory = 25, title="The KEGG enrichment analysis of all DEGs")+ scale_size(range=c...
Bubble chart showing the results of BP enrichment terms for DEGs. X-axis: the ratio of DEGs belong to the corresponding terms/pathways versus the whole DEGs. Y-axis: the top 20 BP terms(或the significant enrichment pathways). The color of the bubble ...
#KEGG enrichment install.packages("stringr") library(stringr) ### barplot kegg_barplot <- barplot(kegg_enrich_results,showCategory = 10, title="The KEGG enrichment analysis of all DEGs")+ scale_size(range=c(2, 12))+ scale_y_discrete(labels=function(kegg_enrich_results) str_wrap(kegg_en...
富集分析(Enrichment Analysis)是一种广泛应用于生物信息学研究的统计方法,主要用于检验一个基因集合中某些功能或特征的富集程度。富集分析的主要目的是从大量基因数据中找出有生物学意义的模式和功能。根据分析的目标和方法,富集分析可以分为以下几种类型: 基因本体论富集分析(Gene Ontology Enrichment Analysis):这是最常...
barplot(ego_bp,showCategory = 18,title="The GO_BP enrichment analysis of all DEGs ") ggplot2参数意义具体可以看这篇 barplot() dotplot() emapplot() 4) 或者是KEGG分析 输入的gene要为vector格式的entrezid,可以用is.vector()判断是否是vector格式 ...
GO enrichment analysis provides all GO terms that significantly enriched in DEGs comparing to the genome background, and filter the DEGs that correspond to biological functions.GO enrichment analysis was performed using the OmicShare tools,a free online platform for data analysis (www.omicshare.com/to...
Gene ontology (GO) enrichment bar chart of DEGs showing most enriched GO terms of (A) upregulated and (B) downregulated DEGs in Low-N in both tissues.