The median AGS estimate range of 2.2 to ~3.0 Mbp in the sampled free-living (0.1–3 µm in size) marine prokaryotic communities (n = 209 metagenomes) is consistent with other large-scale metagenome sequence-based estimates and the sizes of metagenome-assembled prokaryotic genomes (MA...
Regardless of the mechanisms of change, genome size has been found to be positively correlated with cell and nucleus sizes and inversely correlated with cell division rate in a causative manner across distantly related taxa10,16. These universal cytogenomic relationships result, by extension, in stro...
Recent studies have shown that the genome of different organisms is partitioned into chromatin domains, usually called topologically associated domains (TADs), which are invariable between cell types and evolutionary conserved in related species1. To understand TAD formation, researchers had focused on ...
In addition, we noticed that different genome sizes can also lead to the comparison of collinearity modules. For example, there are fewer inversions and translocations between Ph. nicotianae BL and Ph. nicotianae JM01 than the other two species. 3.3. The Pathogenic Mechanisms of Ph. nicotianae ...
another, with smaller-sized structures being contained within progressively larger structures. However, the sizes and biological mechanisms driving these structures are sometimes discordant. Additionally, most methods used to examine genome organization are performed on populations of cells, and as a result...
5) measures the differences between orthologous proteins of different organisms and therefore well reflects their evolutionary distances. Within our selected Hypoxylaceae, the AAI ranged from 76.1 to 98.5% and X. hypoxylon showed values between 68.3 and 70.7% when compared to other species. For P...
This assembly included mate-pair Illumina libraries with insert sizes of up to 9 kbp, which helped us to predict the order and orientation of a number of the nine mitochondrial contigs. This was then followed by a process of designing primers to span contigs, followed by Sanger sequencing to...
Thermococcus gammatolerans was isolated from samples collected from hydrothermal chimneys. It is one of the most radioresistant organisms known amongst the Archaea. We report the determination and annotation of its complete genome sequence, its compariso
configurations, we conducted PCR experiments followed by Sanger sequencing. Four pairs of primers were utilized to validate the correctness of path p1, p2, p3, and p4, respectively (Fig.1A). The PCR amplification results displayed bands of the expected sizes (Fig.1B), and the Sanger ...
The latter is essentially a distribu- tion of means (i.e., the DNA value for an individual is the mean of all 30 measured nuclei from that individual). The distributions of DNA values of individuals within each species were not tested because of their small (N = 10) sample sizes. ...