input文件是 exon_probe.hg38.gene.bed,见我前面的教程(数据处理过程中有的是意外),制作得到 targets.preprocessed.interval.list 这个文件后面需要用,如下: 代码语言:javascript 代码运行次数:0 运行 AI代码解释 tail /home/jianmingzeng/biosoft/GATK/resources/bundle/hg38/cnv/targets.preprocessed.interval.list ch...
GATK BaseRecalibrator报错”The contig order in dbsnp_138.hg38.vcf and reference is not the same“ 首先,用 picard 中的SortVcf将dbsnp_138.hg38.vcf根据参考基因组排序 picard SortVcf -I dbsnp_138.hg38.dic.vcf -O order_dbsnp_138.hg38.vcf -SEQUENCE_DICTIONARY hg38.dict 1 如果报错为“java...
dict=/home/jianmingzeng/biosoft/GATK/resources/bundle/hg38/Homo_sapiens_assembly38.dict INDEX=/home/jianmingzeng/biosoft/GATK/resources/bundle/hg38/bwa_index/gatk_hg38 GATK=/home/jianmingzeng/biosoft/GATK/gatk-4.0.2.1/gatk GATK=/home/jianmingzeng/biosoft/GATK/gatk-4.0.3.0/gatk DBSNP=/home/jian...
dict=/home/jianmingzeng/biosoft/GATK/resources/bundle/hg38/Homo_sapiens_assembly38.dict INDEX=/home/jianmingzeng/biosoft/GATK/resources/bundle/hg38/bwa_index/gatk_hg38 GATK=/home/jianmingzeng/biosoft/GATK/gatk-4.0.2.1/gatk GATK=/home/jianmingzeng/biosoft/GATK/gatk-4.0.3.0/gatk DBSNP=/home/jian...