installation takes approximately 30 min, while analysing three fungal genomes (~ 35 Mb) requires 1 h and 18 min. On an 8-core i7 processor with 40 GB of RAM, installation takes 14 min, and analysis time drops to 46 min (Supplementary Table S3). Genome size significantly impacts ...
Full size image Fig. 6 Internal representation improves outcome prediction compared with the microbiome and when possible also metabolites and is associated with datasets features—on WGS datasets. This figure follows the structure of the previous figure, but for WGS. The datasets used are ERAWIJANTA...
Full size table To fill this gap, we introduce the multi-functional bioinformatic pipeline MetaPop, written in python and R and bundled in a bioconda package, that analyzes and visualizes microbial and viral community metagenomic sequence data at both the inter-(macrodiversity) and intra-(microdive...
Full size image If the training data for ANN is a time series, which is the case for many real-world problems in the energy and transportation sectors, the ANN model also needs a mechanism to take the past into account. For example, when modeling energy demand, the future prediction of ...
python train.py \ --out_dir="stories260K" \ --batch_size=50 \ --max_seq_len=512 \ --gradient_accumulation_steps=1 \ --vocab_source="custom" \ --vocab_size=512 \ --dim=64 \ --n_layers=5 \ --n_heads=8 \ --n_kv_heads=4 \ --multiple_of=4 \ --learning_rate=1e-4...
C# change label font size to fit parent panel on form resize event C# chart - X Axis in hours, Data provided in seconds c# Check registry if program is installed if yes get install location ? C# Check to make sure first character in a string is a letter C# check username if already ...
Full size image Gene-set enrichment analysis (GSEA) on DEGs of Case compared to healthy controls and various immune pathways showed complement activation and type I IFN signaling. The same analysis on Case compared to SLE patients, showed that antigen receptor-mediated signaling, B-cell activation...
Full size image A full description of BALL's functionality would fall well outside of the scope of this note; the current version (1.3 at the time of writing) contains more than 730 classes and more than 700,000 lines of code (a comprehensive overview can be found in the online documenta...
Full size image Cell–cell communication plays a vital role in multi-cellular organisms, and it is influenced by physical location within the cellular microenvironment. Spatially adjacent cells are more likely to interact with each other. Thus, accurate deconvolution of cell types enables the identific...
Full size image Prevalence of morbidities per cluster are shown in Additional file 1, Supplementary Fig. 4. A detailed characterization of the patients in each cluster was enabled by integration of perinatal variables (Additional file 1, Supplementary Fig. 5), demonstrating an even distribution witho...