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Fastq stat tool based on CLI Usage FastQc -fq|-gz either a fastq.gz|fastq FastQc file is a binary file for linux. you can just download it and use it. the quality bar plot meaning 5 : ---|---| ( mean of 1,2,3,4,5 position quality score ) 10 ...
Both works successfully on my side: I got the same number of reads in fastq files and matching read query name after alignment and sorting (instead of checking the simulated fastq file, it is more reliable to check the read id in sam file as reads in fastq file are not sorted by read ...
Fastq stat tool based on CLI Usage FastQc -fq|-gz either a fastq.gz|fastq FastQc file is a binary file for linux. you can just download it and use it. the quality bar plot meaning 5 : ---|---| ( mean of 1,2,3,4,5 position quality score ) 10 ...