FastQTL是一款专门用于cis-eQTL分析的软件,在GTEx项目中就是采用该软件进行cis-eQTL的分析,对应的文章发表在Bioinformatics杂志上,链接如下 https://academic.oup.com/bioinformatics/article/32/10/1479/1742545 源代码保存在sourceforge上,网址如下 http://fastqtl.sourceforge.net/ 该软件具有以下几个特点 运行速度快,...
fastQTL--vcf genotypes.vcf.gz--bed phenotypes.bed.gz--region22:17000000-18000000--out nominals.seed.txt.gz--seed123456789 可用--cov参数添加协变量文件: 代码语言:javascript 复制 fastQTL--vcf genotypes.vcf.gz--bed phenotypes.bed.gz--region22:17000000-18000000--out nominals.cov.txt.gz--cov cov...
下載原始碼套件 fastqtl: [fastqtl_2.184+dfsg-7build2.dsc] [fastqtl_2.184+dfsg.orig.tar.xz] [fastqtl_2.184+dfsg-7build2.debian.tar.xz] 維護者: Ubuntu Developers (郵件存檔) Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly. Original Ma...
跑命令fastqtl2mash-docker sos run /path/fastqtl_to_mash.ipynb --data_list /path/FastQTLSumStats.list --gene_list /path/mashr/GTEx_genes.txt --cols 3 4 5 -j 8时出现的报错。 解决方案: cd/path/ fastqtl2mash-docker sos run ./fastqtl_to_mash.ipynb --data_list ./FastQTLSumStats.list...
Enhanced version of the FastQTL QTL mapper. Contribute to francois-a/fastqtl development by creating an account on GitHub.
run_FastQTL_threaded.py ${genotypes}.vcf.gz ${phenotypes}.bed.gz ${prefix} --covariates ${covariates}.txt.gz --window 1e6 --ma_sample_threshold 10 --maf_threshold 0.01 --chunks 100 --threads 10 Permutation pass: run_FastQTL_threaded.py ${genotypes}.vcf.gz ${phenotypes}.bed.gz ${pr...
fastQTL --vcf genotypes.vcf.gz \ --bed phenotypes.bed.gz \ --region 22:17000000-18000000 \ --out nominals.default.txt.gz 1. 2. 3. 4. 输出结果的内容示意如下 第一列为基因ID, 第二列为snp ID, 第三列为基因和SNP之间的距离, 软件默认分析距离1M以内的SNP-Gene对, 第四列为pvalue值。更多...
FastQTL是一款专门用于cis-eQTL分析的软件,在GTEx项目中就是采用该软件进行cis-eQTL的分析,对应的文章发表在Bioinformatics杂志上,链接如下 https://academic./bioinformatics/article/32/10/1479/1742545 源代码保存在sourceforge上,网址如下 http://fastqtl./ ...
下載原始碼套件 fastqtl: [fastqtl_2.184+dfsg-7build2.dsc] [fastqtl_2.184+dfsg.orig.tar.xz] [fastqtl_2.184+dfsg-7build2.debian.tar.xz] 維護者: Ubuntu Developers (郵件存檔) Please consider filing a bug or asking a question via Launchpad before contacting the maintainer directly. Original Ma...
(binary, objects, headers & sources) FILE_BIN=bin/fastQTL FILE_O=$(shell for file in `find src -name *.cpp`; do echo obj/$$(basename $$file .cpp).o; done) FILE_H=$(shell find src -name *.h) FILE_CPP=$(shell find src -name *.cpp) #default all: linux #linux release ...