If you have written any small but useful programs to deal with FASTQ files, please consider submitting them for inclusion in fastq-tools. Check out the Github page (https://github.com/dcjones/fastq-tools) or send mail to the author (dcjones@cs.washington.edu). ...
sana 清理损坏的单行fastq文件 scat real time recursive concatenation and streaming of fastx files seq 转换序列(反向,补充,提取ID…) shuffle 随机序列 sliding 序列滑窗提取,支持环形基因组 sort 按id/名称/序列/长度排序序列 split 按id/seq区域/大小/部件将序列拆分为文件(主要用于FASTA) ...
maxulysse deleted the fastq_fastqc_umitools_trimgalore branch October 9, 2024 17:58 maxulysse mentioned this pull request Oct 10, 2024 Important! Template update for nf-core/tools v3.0.1 nf-core/rnaseq#1401 Merged Sign up for free to join this conversation on GitHub. Already have an...
fastx-mutate-tools 在这个 jar 中,我包含了一些简单的工具,允许在 fasta/fastq 文件中引入 SNPs/indels/亚硫酸氢盐转换。 请注意,突变是根据指定的概率均匀插入的,因此这些工具不会模拟真实的突变。 但是,您可能会发现它们可用于测试 DNA/亚硫酸氢盐对准器的性能。 这些工具被设计为与诸如 wgsim 或 SimSeq 之类...
Fastx-toolkit: FASTQ/A short-reads pre-processing tools. Cold Spring Harbor Laboratory. 2010. http://hannonlab.cshl.edu/fastx_toolkit. Accessed 26 Dec 2017.Gordon A, Hannon G. FASTX-Toolkit: FASTQ/A short-reads preprocessing tools. 2010. Available from: http://hannonlab.cshl.edu/fastx_...
I have developed fqtools; a fast and reliable FASTQ file manipulation suite that can process the full set of valid FASTQ files, including those with multi-line sequences, whilst identifying invalid files. Fqtools is faster than similar tools, and is designed for use in automatic processing ...
TriageTools是用于对来自高通量测序项目的原始数据(fastq读取)进行分区的工具的集合。 这些工具旨在用于基本数据管理以及对某些子集的分析进行优先级排序。 项目Wiki包含使用情况信息。点赞(0) 踩踩(0) 反馈 所需:1 积分 电信网络下载 FD1-游戏程序安装包 2024-12-11 17:05:51 积分:1 ...
Method/Function:fastaOrFastq 导入包:bioinformatic_tools 每个示例代码都附有代码来源和完整的源代码,希望对您的程序开发有帮助。 示例1 defappendStringToHeaders(in_file,string_to_append):# Appends string to each FASTA Header IDfileType=fastaOrFastq(in_file)withopen(in_file,'r')asin_handle:out_file...
writeSimContFastq: Create fastq files with simulated k-mer sequencesWolfgang Kaisers
fastqq function: Reading summarizing information from fastq files.Wolfgang Kaisers