2024-01-28T11:17:08 fasterq-dump.3.0.10 err: the input data is missing the QUALITY-column fasterq-dump quit with error code 3 I would like to know what the reasons are, and possible solutions, thank you very much!
disk-limit exeeded!fasterq-dump quit with error code 3 #/broad/dunnlab/BLM/bash_scripts/SRR15808961_fasterq.sh#!/bin/bashcd/broad/dunnlab/BLM/meningioma_scRNA/Raleigh/fastq mkdir SRR15808961cdSRR15808961 apptainerexec-B /broad/dunnlab/ \ /broad/dunnlab/Docker_Container_Location/sra-tools.simg...
最近在使用fastq-dump或者是fasterq-dump解压SRA数据的时候总是出现如下问题: clipboard.png 也试过github给出的解决办法: 1)给出软件或者SRA的全路径 2)更新sra-tools的版本 但是仍然出现上述问题,于是使用最终的办法: 3)重新下载sra数据,便可解决以上问题...
R = results(P,SRAFQDump) R =struct with fields:Reads: [1×1 bioinfo.pipeline.datatype.Incomplete] Reads_1: [1×1 bioinfo.pipeline.datatype.File] Reads_2: [1×1 bioinfo.pipeline.datatype.File] Reads_3: [1×1 bioinfo.pipeline.datatype.Incomplete] Reads_4: [1×1 bioinfo.pipeline...
fastq-dump quit with error code 3 commentedDec 7, 2020 The logging output of SRA Tools can be somewhat cryptic. But in this case it's fairly clear: storage exhausted while writing file within file system module https://github.com/ncbi/sra-tools/wiki/HowTo:-fasterq-dump ...
Hi, I have been trying to download and convert SRA to fastq for a while but I keep getting an error code. ~/sratoolkit.3.0.0-centos_linux64/bin/fasterq-dump --ngc ../../prj_XXXX.ngc SRR15467629 fasterq-dump quit with error code 3 When I ...
I have created a separate environment solely for sra-tools, but it didn't work. Could someone please help me with this? It's like this for about 3-4 days (This is my first time using sra-tools) Error messages: 2022-07-11T05:49:46 fasterq-dump.2.9.1 sys: connection busy while val...
fasterq-dump quit with error code 3 millerh1 and lajoimat reacted with thumbs up emoji 👍 Copy link Contributor kwrodarmercommentedAug 12, 2020 It's an on-going bug It's a system. The bug is not in the SRA Toolkit. You observe it because we observe it. We are working as hard as...
I am trying to download files from project GEO series GSE132044. From what I can tell, most (if not all) of the associated runs are paired-end with multiple fastq files deposited, but I only get a single fastq file every single time. For...
Hi All, I am trying to use fasterq-dump to extract fasta files for this accession SRR16235266 Anytime I use it fastq files are rather generated. Below is the command I use fasterq-dump --fasta 60 SRR16235266 Please advice.