I am a new student in bioinformatics and had a problem when I tried to format convert a file of type sralite.1: PS C:\Users\kjhiku\Desktop\sratoolkit.3.0.10-win64> fasterq-dump-O.\newsra C: \ Users \ kjhiku \ Desktop \ sratoolkit 3.0.10 ...
disk-limit exeeded!fasterq-dump quit with error code 3 #/broad/dunnlab/BLM/bash_scripts/SRR15808961_fasterq.sh#!/bin/bashcd/broad/dunnlab/BLM/meningioma_scRNA/Raleigh/fastq mkdir SRR15808961cdSRR15808961 apptainerexec-B /broad/dunnlab/ \ /broad/dunnlab/Docker_Container_Location/sra-tools.simg...
最近在使用fastq-dump或者是fasterq-dump解压SRA数据的时候总是出现如下问题: clipboard.png 也试过github给出的解决办法: 1)给出软件或者SRA的全路径 2)更新sra-tools的版本 但是仍然出现上述问题,于是使用最终的办法: 3)重新下载sra数据,便可解决以上问题...
fasterq-dump quit with error code 3 wraetz commentedon Jul 20, 2020 wraetz on Jul 20, 2020 Contributor Your second command "fasterq-dump ERR695638" does not use the accession you downloaded via prefetch. By specifying a bare accession the tool always goes out over the internet and fetches ...
Hi, I have been trying to download and convert SRA to fastq for a while but I keep getting an error code. ~/sratoolkit.3.0.0-centos_linux64/bin/fasterq-dump --ngc ../../prj_XXXX.ngc SRR15467629 fasterq-dump quit with error code 3 When I ...