Single-cell RNA-seq, UMI deduplication, Quantification, Cellular barcodeWe introduce alevin, a fast end-to-end pipeline to process droplet-based single-cell RNA sequencing data, performing cell barcode detection, read mapping, unique molecular identifier (UMI) deduplication, gene count estimation, and...
A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantificationdoi:10.1093/BIOINFORMATICS/BTAA450Avi SrivastavaLaraib MalikHirak SarkarRob PatroOxford University Press (OUP)
Alevin efficiently estimates accurate gene abundances from dscRNA-seq datadoi:10.1101/335000Avi SrivastavaLaraib MalikTom Sean SmithIan SudberyRob PatroCold Spring Harbor Laboratory