include the National Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EBI) and the DNA Data Bank of Japan (DDBJ). The... R Leinonen,H Sugawara,M Shumway - 《Nucleic Acids Research》 被引量: 973发表: 2010年 The Sequence Read Archive INSDC partners include ...
(2010) Biological databases at DNA Data Bank of Japan in the era of next-generation sequencing technologies. Adv Exp Med Biol 680: 125-135.↵ Kodama Y , Kaminuma E , Saruhashi S , Ikeo K , Sugawara H , Tateno Y , et al . Biological databases at DNA Data Bank of Japan in the...
Although this review focuses on virus databases, most of these are reliant on other generic databases as the source of their data. The three main repositories for nucleotide sequence data are GenBank from The National Center for Biotechnology Information (NCBI),DNA Data Bank of Japan(DDBJ), and...
The Center for Information Biology and DNA Data Bank of Japan (CIB-DDBJ) has operated biological databases since 1987 in collaboration with NCBI and EBI. As one of the three major public databases, CIB-DDBJ has run four primary databases DDBJ, CIBEX, DDBJ Trace Archive (DTA), and DDBJ Rea...
Fastq files of the 26 LUAD cell lines were downloaded from the DNA Data Bank of Japan (PRJDB2256). Fastq files of normal lung and testis tissues were downloaded from Sequence Read Archive of NCBI (PRJNA34535 & PRJEB4337). All accession numbers are listed in supplementary tableS3. Read ali...
He’s incredibly proud of his military service. The next day, I found him a flag and Constitution shirt. He had trouble reading it, so I read it aloud to him as he cried. OMG! I cried too. We hugged each other. God bless this man. ...
There are three main sequence databases: the DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp/index-e.html), EMBL Nucleotide Sequence Database (EMBL-Bank) (http://www.ebi.ac.uk/embl/) and GenBank (http://www.ncbi.nlm.nih.gov/genbank/). These function as repositories fo...
(BioProject ID:PRJNA514100;PRJNA434178). BS-seq data of Nipponbare and Kitaake reproduction cells were respectively downloaded from the DNA Data Bank of Japan (ID:DRA007969) and NCBI (SRP119200). ChIP-seq data (H3K9me2, H3K4me3, H3K27ac) of MH63 and ZS97 leaf were downloaded from the ...
The CellRanger Count v7.1.0 pipeline (https://cloud.10xgenomics.com) was used to process raw sequence data in FASTQ format. The data were aligned to the mouse reference genome using default barcode assignment and Unique Molecular Identifier (UMI) counting with a 2020-A version of the mouse ...
which employs a combination of TET enzyme with borane to exclusively convert the 5% of methylated cytosines, thus preserving the genetic code and opening the possibility of simultaneous methylome and genome analysis on the same sequencing data. Here, we aimed to distinguish true cancer signals in ...