Sequence Read Archive (SRA) makes biological sequence data available to the research community to enhance reproducibility and allow for new discoveries by comparing data sets. The SRA stores raw sequencing data and alignment information from high-throughput sequencing platforms, including Roche 454 GS Sy...
The Sequence Read Archive序列读取存档(SRA) 序列读取存档(SRA)存储来自下一代测序平台的测序数据。 Structure (Molecular Modeling Database) 结构(分子模型数据库) 包含源自蛋白质数据库的大分子3D结构,以及用于可视化和比较分析的工具。 Sparcle(亚家族蛋白质结构标记引擎)是用于蛋白质序列的功能表征和标记的资源,其...
Sequence Read Archive (SRA), and Trace Archive. EMBL-Bank contains the assembled data for sequences, where the submitted data are assembled by the submitter itself into one contig/scaffold. The submitter also provides the annotations of the assembled sequences, particularly for the genic regions....
000 named organisms, more than 110,000 within the embryophyta, obtained through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Daily data exchange with the European Nucleotide Archive (ENA) in Europe and the DNA Data Bank of Japan ensures worldwide...
read.alignment函数:用于读取其他软件生成(mase、clustal、phylip、fasta 或 msf)的比对序列数据,以进行多序列比对。format = "fasta" read.fasta(file = system.file("sequences/ct.fasta.gz", package = "seqinr"), seqtype = c("DNA", "AA"), as.string = FALSE, forceDNAtolower = TRUE, set.attri...
You can directly submit ribosomal RNA (rRNA), rRNA-ITS, or Influenza sequences to GenBank. Other sequence types should be submitted with one of the alternative tools. For unassembled raw sequence reads, you can submit them to the Sequence Read Archive (SRA). ...
Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Nucleotide database, which links to related information such as taxonomy, genomes, protein sequences and structures, and biomedical journal literature in PubMed. BLAST provides ...
Researchers can submit both the raw sequence reads for both genomic and RNA-Seq studies to SRA (Sequence Read Archive), as well as the assemblies that are derived from these reads to the WGS (Whole Genome Shotgun) and TSA (Transcriptome Shotgun Assembly} resources. There are programmatic and...
Repository files navigation README Unlicense licenseHIVDB GenBank Submission Tool This tool can help you prepare aligned sequences, descriptive data, and sequence features for GenBank submission. It's designed for sanger sequencing or consensus sequence of NGS sequencing.How...
README MIT license gbmunge Munge GenBank files into FASTA sequences and tab-separated metadata. This little C program will extract the following information from a GenBank file: name accession length submission date host country collection date In addition to extracting this information, dates are ...