The DNA Data Bank of Japan (DDBJ; http://www.ddbj.nig.ac.jp) maintains and provides archival, retrieval and analytical resources for biological information. The central DDBJ resource consists of public, open-access nucleotide sequence databases including raw sequence reads, assembly information and ...
Kodama Y, Kaminuma E, Saruhashi S, Ikeo K, SugawaraH TY, Nakamura Y (2010) Biological databases at DNA data bank of Japan in the era of next-generation sequencing technologies. Adv Exp Med Biol 680:125–135Kodama Y, Kaminuma E, Saruhashi S, Ikeo K, Sugawara H, et al. (2010) ...
All sequencing data used in this work are available from the DNA DataBank of Japan (DDBJ) Sequence Read Archive (DRA) under the accession numbers DRA001121, DRA002710, and DRA004158 for PacBio and Illumina sequencing, DRA002647 for RNA-seq, and DRA002758 for RAD-seq. The genomic assembly ...
DDBJ: DNA Data Bank of Japan GenBankcontains all annotated and identified DNA sequence information SRA: Short Read Archivecontains measurements from high throughput sequencing experiments UniProt: Universal Protein Resourceis the most authoritative repository of protein sequence data. Protein Data Bank (PDB...
Data availability The RNA-Seq data are available from the DNA Data Bank of Japan (DDBJ;http://www.ddbj.nig.ac.jp/) under the accession number, DRA010010. All the source data underlying the graphs and charts are presented in Supplementary Data2,3,12and13. ...
Study: small DNA marker set helpful, but raises privacy concerns A new study suggests 13 tiny snippets of deoxyribonucleic acid (DNA) may be enough to infer hundreds of thousands more markers, capable of revealing a wealth of genetic information. Volvo Cars to build Android into new connected ...
Now in its 50th year of continuous operation, the PDB serves as the singular global repository for 3D structural information, making >170,000 experimentally determined structures of proteins, DNA, RNA, and their complexes with drugs and/or other small molecules freely available without usage ...
c Contact matrix generated by aligning Hi-C data set to the OKI2018_I69 assembly with Juicer and 3D-DNA pipelines. Pixel intensity in the contact matrices indicates how often a pair of loci collocate in the nucleus Full size image Table 1 Comparison of the OKI2018_I69 assembly with the ...
et al. DNA data bank of Japan (DDBJ) progress report. Nucleic Acids Res 44, D51–D57, doi:10.1093/nar/gkv1105 (2016). 84. Gibson, R. et al. Biocuration of functional annotation at the European nucleotide archive. Nucleic Acids Res 44, D58–D66, doi:10.1093/nar/gkv1311 (2016). ...
Laboratory of Biodefense and Regulation, Osaka University of Pharmaceutical Sciences, Osaka, Japan Ko Fujimori Research Organization of Information and Systems, Center for Information Biology and DNA Data Bank of Japan (DDBJ), National Institute of Genetics, Shizuoka, Japan ...