CPG岛预测:CpG Island(http://www.uscnorris.com/cpgislands2/cpg.aspx)CpG finder(http://www.softberry.com/berry.phtml?topic=cpgfinder&group=programs&subgroup=promoter)CpG islands revealing(http://l25.itba.mi.cnr.it/cgi-bin/wwwcpg.pl)CpGPlot/CpGReport/Isochore(http://www.ebi.ac.uk/emboss/...
CpG finder(http://www.softberry.com/berry.phtml?topic=cpgfinder&group=programs&subgroup=promoter) CpG islands revealing(http://l25.itba.mi.cnr.it/cgi-bin/wwwcpg.pl) CpGPlot/CpGReport/Isochore(http://www.ebi.ac.uk/emboss/cpgplot/index.html) 启动子结合位点分析工具: Promoter Scan(www://bim...
CpG Island FinderHome Help ContactsCpG Island Finder参考说明:通过输入Fasta格式的序列信息,找出序列中的CpG岛。By default, this program defines a region as a CpG island where G+C content>50%, CpG Observed/Expected ratio>0.60, and length>200 nt....
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CpG PatternFinder is designed to operate cooperatively with BioEdit, a freeware on the internet. It can handle up to 100 files of sample DNA sequences simultaneously, and the total CpG pattern analysis process can be finished in minutes. CpG PatternFinder is an ideal software tool for DNA ...
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Akiba H, Satoh M, Iwatsuki K, Kaiserlian D, Nicolas JF, Kaneko F (2004) CpG immunostimulatory sequences enhance contact hypersensitivity responses in mice. J Invest Dermatol 123:488- 93Akiba, H., Satoh, M., Iwatsuki, K., Kaiserlian, D., Nicolas, J. F. and Kaneko, F., CpG ...
首先需要用cpgCollapse()函数得到一个cluster,然后就可以用blockFinder()计算差异block了。 cluster <- cpgCollapse(mSetSqFlt) ## [cpgCollapse] Creating annotation. ## [cpgCollapseAnnotation] Clustering islands and clusters of probes. ## [cpgCollapseAnnotation] Computing new annotation. ## [cpgCollapseAn...
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